Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 6.0e-129 464.2 230 100.0
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.0e-104 383.6 230 84.8
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 4.2e-98 361.7 227 81.1
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 3.6e-97 358.6 227 80.6
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 2.8e-94 349.0 222 81.1
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-93 346.7 222 80.6
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-93 346.7 222 80.6
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.5e-92 343.2 221 80.1
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 9.4e-90 334.0 222 78.8
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 5.3e-85 318.2 226 70.4
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 3.5e-84 315.5 205 78.0
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 4.5e-84 315.1 234 71.4
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 5.9e-84 314.7 233 70.8
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.0e-83 313.9 222 74.8
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 8.5e-83 310.8 223 73.1
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 1.5e-82 310.1 226 69.0
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 2.5e-82 309.3 234 70.5
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 3.2e-82 308.9 226 70.8
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 3.2e-82 308.9 212 73.1
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 9.4e-82 307.4 192 79.2
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.6e-81 306.6 198 76.3
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 6.1e-81 304.7 223 71.7
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 8.0e-81 304.3 199 75.9
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.8e-80 303.1 246 66.7
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 2.3e-80 302.8 192 77.6
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 3.0e-80 302.4 214 73.4
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.7e-80 301.2 208 72.1
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 8.8e-80 300.8 203 73.4
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 2.0e-79 299.7 209 70.8
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 1.7e-78 296.6 196 75.0
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 6.3e-78 294.7 191 73.3
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 6.3e-78 294.7 178 81.5
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.3e-78 294.7 208 71.2
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.1e-77 293.9 208 71.2
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.4e-77 293.5 236 67.4
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 2.4e-77 292.7 224 66.5
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 7.0e-77 291.2 203 71.4
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 9.1e-77 290.8 209 69.9
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 1.6e-76 290.0 230 64.8
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 4.5e-76 288.5 209 71.3
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 7.7e-76 287.7 199 73.9
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.7e-75 286.6 193 75.1
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.7e-75 286.6 192 73.4
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 2.2e-75 286.2 228 65.8
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 3.8e-75 285.4 187 73.8
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 6.5e-75 284.6 192 73.4
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 6.5e-75 284.6 193 73.6
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 6.5e-75 284.6 193 72.5
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 8.5e-75 284.3 199 73.4
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.5e-74 283.5 193 74.6
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.5e-74 283.5 226 65.9
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.9e-74 283.1 216 68.1
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.9e-74 283.1 222 65.8
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 2.5e-74 282.7 192 71.4
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 4.2e-74 282.0 195 71.8
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 5.5e-74 281.6 192 70.8
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 5.5e-74 281.6 192 70.8
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 9.4e-74 280.8 195 70.3
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.2e-73 280.4 202 67.8
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 1.6e-73 280.0 193 74.1
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 2.1e-73 279.6 212 66.5
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 2.7e-73 279.3 191 71.2
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.7e-73 278.5 228 64.5
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 4.7e-73 278.5 188 75.5
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.0e-72 277.3 204 66.7
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 1.8e-72 276.6 193 72.5
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 1.8e-72 276.6 204 66.7
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 2.3e-72 276.2 210 65.7
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 3.0e-72 275.8 191 71.2
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 5.2e-72 275.0 219 67.6
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 6.8e-72 274.6 192 71.9
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 8.8e-72 274.2 192 71.9
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 8.8e-72 274.2 223 63.2
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 2.6e-71 272.7 203 66.5
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 4.4e-71 271.9 316 52.8
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 4.4e-71 271.9 205 69.8
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 2.8e-70 269.2 175 73.7
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 5.4e-69 265.0 188 72.9
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 1.2e-68 263.8 186 72.0
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.6e-68 263.5 188 72.9
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 2.0e-68 263.1 179 73.2
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 3.5e-68 262.3 186 71.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.5e-68 261.9 146 87.0
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 7.7e-68 261.2 180 69.4
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 1.7e-67 260.0 185 71.4
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 2.3e-67 259.6 185 70.8
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 6.6e-67 258.1 178 69.1
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.5e-66 256.1 219 62.1
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.1e-65 253.1 191 64.4
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 1.0e-64 250.8 209 59.8
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 6.8e-64 248.1 190 65.3
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.5e-63 246.9 214 61.7
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 6.3e-62 241.5 264 52.7
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.8e-61 240.0 181 64.6
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 4.1e-61 238.8 190 61.6
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 6.1e-57 224.9 143 73.4
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 6.1e-57 224.9 190 59.5
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 4.4e-55 218.8 198 54.5
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.2e-54 216.5 198 54.0
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 3.7e-54 215.7 186 58.1
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.9e-51 205.7 173 63.0
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.5e-50 203.0 150 67.3
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.2e-49 200.7 148 66.9
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 1.8e-48 196.8 154 64.3
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 3.6e-41 172.6 163 54.6
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.4e-40 170.6 163 53.4
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 6.8e-40 168.3 102 78.4
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 3.4e-39 166.0 163 52.1
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 1.9e-37 160.2 118 72.9
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.5e-36 156.0 98 73.5
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.4e-32 144.1 134 62.7
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 5.8e-31 138.7 143 49.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 3.8e-30 136.0 80 80.0
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.3e-27 126.7 78 76.9
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.6e-27 125.2 78 75.6
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.7e-27 124.8 78 75.6
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 3.1e-24 116.3 61 88.5
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 9.0e-24 114.8 61 86.9
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 3.8e-22 109.4 213 34.3
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 1.3e-19 100.9 77 66.2
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.6e-15 86.7 56 75.0
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.5e-10 70.9 39 82.1
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 2.5e-10 70.1 40 80.0
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 7.4e-10 68.6 35 94.3
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 2.1e-09 67.0 40 75.0
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 2.8e-09 66.6 39 79.5
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 3.4e-07 59.7 90 46.7


User provided reference genes

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