Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 2359.7 1203 100.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 2119.0 1206 89.6
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 2104.7 1201 89.0
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 2045.4 1201 86.2
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 2028.1 1198 85.6
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2026.1 1198 85.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2025.8 1198 85.5
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2017.3 1198 85.1
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2013.4 1198 84.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2011.1 1198 84.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 2008.0 1208 84.2
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1920.6 1210 80.6
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1909.4 1210 80.9
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1890.2 1207 78.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1890.2 1203 80.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1888.2 1215 78.9
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1884.8 1216 78.8
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1880.1 1202 79.8
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1877.8 1212 78.8
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1862.4 1213 78.5
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1856.6 1212 77.9
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1849.3 1212 77.1
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1846.2 1212 77.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1843.2 1206 76.9
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1834.3 1210 76.6
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1816.6 1205 75.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1814.7 1215 75.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1796.6 1185 76.7
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1789.6 1213 76.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1781.5 1202 75.1
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1781.1 1209 73.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1777.3 1207 74.4
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1773.8 1208 74.7
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1772.7 1222 74.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1770.7 1206 75.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1768.4 1207 74.6
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1766.9 1171 76.5
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1765.7 1213 74.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1761.5 1211 73.9
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1756.5 1198 75.5
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1752.3 1206 73.5
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1749.6 1211 72.3
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1734.9 1208 72.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1733.8 1208 73.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1733.4 1213 74.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1724.1 1211 70.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1711.8 1169 73.7
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1709.1 1203 72.3
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1702.6 1208 70.4
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1701.8 1212 71.2
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1695.6 1199 72.1
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1693.3 1208 70.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1691.4 1168 73.0
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1683.7 1213 71.1
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1676.8 1210 70.8
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1676.4 1208 70.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1676.4 1206 70.6
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1673.3 1206 71.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1672.1 1198 70.5
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1670.6 1208 69.6
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1669.4 1207 69.8
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1667.9 1207 69.3
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1667.5 1212 69.8
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1667.1 1207 69.7
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1665.6 1210 69.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1665.2 1212 69.8
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1664.0 1208 69.5
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1652.5 1210 68.4
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1652.1 1114 74.4
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1645.9 1206 70.5
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1213 71.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1631.7 1209 68.3
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1627.5 1208 67.9
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1626.3 1193 68.7
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1622.8 1201 69.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1620.9 1202 68.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1620.5 1199 67.9
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1620.1 1208 68.4
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1614.7 1186 69.2
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1609.3 1198 67.2
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1608.6 1184 68.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1607.4 1206 69.0
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1605.1 1193 68.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1598.6 1203 67.5
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1595.5 1204 66.9
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1593.9 1202 67.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1592.8 1212 66.3
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1583.5 1191 67.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1559.7 1257 64.9
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1501.1 1211 64.5
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1488.4 1138 66.1
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1486.9 1026 72.9
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1485.7 983 76.0
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1476.8 1292 61.6
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1461.8 1141 65.1
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1422.1 1208 62.9
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1416.0 1201 60.9
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1390.6 1179 60.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1381.7 1204 59.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1342.4 1217 57.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1291.6 1041 64.7
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1229.9 962 68.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1228.8 836 76.0
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1219.5 891 68.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1174.5 809 73.2
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1104.0 1151 54.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.4e-269 932.9 1239 43.7
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 7.2e-266 921.4 1237 42.4
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 8.8e-264 914.4 1237 42.4
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.4e-263 912.1 633 72.0
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 2.2e-262 909.8 1191 45.0
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 4.8e-254 882.1 1159 44.7
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 8.5e-251 871.3 1178 44.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 8.5e-251 871.3 1159 44.3
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 3.6e-241 839.3 1071 46.8
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.9e-238 829.7 1211 39.8
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.1e-229 799.3 798 54.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 8.6e-219 765.0 601 66.7
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 4.7e-217 759.2 1211 37.9
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.3e-202 709.9 636 57.9
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.9e-196 688.7 571 62.2
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.2e-181 640.2 540 60.9
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 7.4e-178 629.0 480 71.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.8e-174 616.7 418 75.1
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.3e-155 554.3 487 58.7
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 4.4e-130 470.3 321 75.1
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 6.6e-118 429.9 297 74.1
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 8.7e-86 323.2 1381 24.0
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.7e-81 308.9 210 72.4
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.9e-81 308.1 210 73.8
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.3e-73 282.7 267 54.7
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.8e-68 265.0 215 64.7
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 4.0e-67 261.2 187 71.1
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.4e-54 219.5 480 31.9
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.7e-52 212.6 435 32.4
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 3.3e-45 188.3 109 86.2
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.5e-34 151.4 772 23.2
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 6.5e-25 120.9 95 68.4
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 4.4e-21 108.2 364 26.4
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 2.2e-20 105.9 88 65.9
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 4.2e-16 91.7 90 53.3
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 4.2e-16 91.7 172 41.3
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 4.0e-14 85.1 73 57.5
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 4.4e-13 81.6 63 66.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.2e-12 79.3 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.2e-12 79.3 50 80.0
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 8.3e-12 77.4 79 54.4
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.1e-11 75.1 69 56.5
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 5.4e-11 74.7 317 24.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 1.6e-10 73.2 62 58.1
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 3.5e-10 72.0 79 46.8
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.5e-08 66.6 69 47.8
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.5e-08 66.6 182 28.0
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.9e-08 66.2 76 43.4
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 2.5e-08 65.9 54 64.8
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 2.5e-08 65.9 54 64.8
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 2.1e-07 62.8 93 46.2
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 2.3e-06 59.3 36 72.2
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 3.1e-06 58.9 48 58.3
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 8.9e-06 57.4 108 38.0


User provided reference genes

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