Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G335700 Prunus persica HOM05D017371 ORTHO05D017946 4.6e-64 247.7 120 100.0
MD04G1217400 Malus domestica HOM05D000519 ORTHO05D017946 1.6e-27 126.3 120 53.3
FvH4_6g03900 Fragaria vesca HOM05D000519 ORTHO05D017946 4.7e-24 114.8 118 52.5
MD12G1232100 Malus domestica HOM05D000519 ORTHO05D017946 5.7e-22 107.8 117 47.9
FvH4_6g08240 Fragaria vesca HOM05D017371 ORTHO05D017946 5.3e-20 101.3 117 43.6
FAN09G0620 Fragaria x ananassa HOM05D000519 ORTHO05D017946 5.3e-20 101.3 113 50.4
FAN14G4562 Fragaria x ananassa HOM05D017371 ORTHO05D017946 5.3e-20 101.3 117 43.6
Prupe.6G335600 Prunus persica HOM05D017371 ORTHO05D017946 3.5e-19 98.6 95 51.6
FvH4_3g34980 Fragaria vesca HOM05D017371 ORTHO05D017946 3.7e-13 78.6 117 36.8
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 4.8e-13 78.2 112 43.8
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 6.3e-13 77.8 119 42.0
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 1.4e-12 76.6 121 44.6
RcHm_v2.0_Chr3g0452681 Rosa chinensis HOM05D000519 ORTHO05D000959 5.4e-12 74.7 118 40.7
Cpa.g.sc75.103 Carica papaya HOM05D000519 ORTHO05D000959 1.2e-11 73.6 118 39.8
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 2.0e-11 72.8 88 43.2
Nitab4.5_0001735g0110 Nicotiana tabacum HOM05D000519 ORTHO05D000959 3.5e-11 72.0 118 39.8
RcHm_v2.0_Chr5g0010601 Rosa chinensis HOM05D000519 ORTHO05D019175 5.9e-11 71.2 121 38.8
Solyc04g014790.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 5.9e-11 71.2 88 42.0
RcHm_v2.0_Chr5g0010541 Rosa chinensis HOM05D000519 ORTHO05D019175 2.9e-10 68.9 122 36.9
MD05G1358700 Malus domestica HOM05D000519 ORTHO05D000959 3.8e-10 68.6 129 37.2
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 5.0e-10 68.2 112 40.2
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 6.6e-10 67.8 100 45.0
Prupe.4G009100 Prunus persica HOM05D000519 ORTHO05D000959 8.6e-10 67.4 132 37.9
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 1.1e-09 67.0 108 40.7
AT5G47550 Arabidopsis thaliana HOM05D000519 ORTHO05D000959 1.5e-09 66.6 101 43.6
MD03G1148300 Malus domestica HOM05D000519 ORTHO05D000959 1.5e-09 66.6 116 39.7
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 1.9e-09 66.2 112 36.6
PGSC0003DMG402023603 Solanum tuberosum HOM05D000519 ORTHO05D000959 1.9e-09 66.2 87 41.4
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 4.2e-09 65.1 112 37.5
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 4.2e-09 65.1 100 44.0
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 4.2e-09 65.1 109 38.5
CAN.G5949.1 Capsicum annuum HOM05D000519 ORTHO05D000959 5.5e-09 64.7 99 39.4
Ca_21040_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 5.5e-09 64.7 96 36.5
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 5.5e-09 64.7 111 34.2
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 5.5e-09 64.7 110 37.3
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 5.5e-09 64.7 116 37.9
HPP92_024485 Vanilla planifolia HOM05D000519 ORTHO05D000959 5.5e-09 64.7 109 38.5
Medtr2g026040 Medicago truncatula HOM05D000519 ORTHO05D000959 7.2e-09 64.3 112 36.6
Peaxi162Scf00924g00035 Petunia axillaris HOM05D000519 ORTHO05D000959 7.2e-09 64.3 114 35.1
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 9.5e-09 63.9 114 34.2
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 9.5e-09 63.9 117 37.6
Nitab4.5_0005135g0030 Nicotiana tabacum HOM05D000519 ORTHO05D000959 9.5e-09 63.9 94 40.4
Psat7g244200 Pisum sativum HOM05D000519 ORTHO05D000959 9.5e-09 63.9 107 36.4
CAN.G449.20 Capsicum annuum HOM05D000519 ORTHO05D000959 1.2e-08 63.5 88 40.9
MD12G1006000 Malus domestica HOM05D000519 ORTHO05D000959 1.2e-08 63.5 130 33.8
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 1.6e-08 63.2 117 33.3
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.6e-08 63.2 102 43.1
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 1.6e-08 63.2 111 32.4
Peaxi162Scf00924g00032 Petunia axillaris HOM05D000519 ORTHO05D000959 1.6e-08 63.2 114 35.1
BcaB07g30771 Brassica carinata HOM05D000519 ORTHO05D000959 2.1e-08 62.8 107 39.3
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 2.1e-08 62.8 115 39.1
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 2.1e-08 62.8 115 39.1
CARHR173800 Cardamine hirsuta HOM05D000519 ORTHO05D000959 2.1e-08 62.8 98 41.8
CDE07G0775 Ceratophyllum demersum HOM05D000519 ORTHO05D000959 2.1e-08 62.8 75 40.0
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 2.1e-08 62.8 114 38.6
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.8e-08 62.4 102 42.2
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.8e-08 62.4 102 43.1
Lsat_1_v5_gn_1_114741 Lactuca sativa HOM05D000519 ORTHO05D000959 2.8e-08 62.4 102 33.3
BcaC04g21616 Brassica carinata HOM05D000519 ORTHO05D000959 3.6e-08 62.0 106 38.7
A09p23090 Brassica napus HOM05D000519 ORTHO05D000959 3.6e-08 62.0 88 40.9
C09p29840 Brassica napus HOM05D000519 ORTHO05D000959 3.6e-08 62.0 106 38.7
BolC9t55847H Brassica oleracea HOM05D000519 ORTHO05D000959 3.6e-08 62.0 106 38.7
BraA09t37913Z Brassica rapa HOM05D000519 ORTHO05D000959 3.6e-08 62.0 88 40.9
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 3.6e-08 62.0 118 37.3
Haze_06945 Corylus avellana HOM05D000519 ORTHO05D000959 3.6e-08 62.0 97 43.3
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 3.6e-08 62.0 107 35.5
FAN06G3217 Fragaria x ananassa HOM05D000519 ORTHO05D000959 3.6e-08 62.0 114 37.7
Lsat_1_v5_gn_1_114780 Lactuca sativa HOM05D000519 ORTHO05D000959 3.6e-08 62.0 113 34.5
Peaxi162Scf00924g00023 Petunia axillaris HOM05D000519 ORTHO05D000959 3.6e-08 62.0 114 34.2
Peaxi162Scf00924g00031 Petunia axillaris HOM05D000519 ORTHO05D000959 3.6e-08 62.0 114 34.2
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 3.6e-08 62.0 112 38.4
VMungo1215G1198 Vigna mungo HOM05D000519 ORTHO05D000959 3.6e-08 62.0 107 35.5
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 4.7e-08 61.6 88 37.5
RcHm_v2.0_Chr5g0010621 Rosa chinensis HOM05D000519 ORTHO05D000959 4.7e-08 61.6 115 39.1
Aqoxy1G04038 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 6.1e-08 61.2 88 40.9
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 6.1e-08 61.2 114 37.7
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 6.1e-08 61.2 112 39.3
Peaxi162Scf00924g00034 Petunia axillaris HOM05D000519 ORTHO05D000959 6.1e-08 61.2 113 33.6
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 8.0e-08 60.8 113 37.2
ECA248G1813 Erigeron canadensis HOM05D000519 ORTHO05D000959 8.0e-08 60.8 91 36.3
Nn1g03277 Nelumbo nucifera HOM05D000519 ORTHO05D000959 8.0e-08 60.8 74 43.2
Prupe.6G215700 Prunus persica HOM05D000519 ORTHO05D000959 8.0e-08 60.8 107 37.4
QL05p069213 Quercus lobata HOM05D000519 ORTHO05D000959 8.0e-08 60.8 118 35.6
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 1.0e-07 60.5 117 35.9
THA.LOC104815487 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 1.0e-07 60.5 92 41.3
FAN02G0204 Fragaria x ananassa HOM05D000519 ORTHO05D000959 1.4e-07 60.1 109 38.5
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.4e-07 60.1 116 34.5
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.4e-07 60.1 117 38.5
Prupe.4G009000 Prunus persica HOM05D000519 ORTHO05D000959 1.4e-07 60.1 93 43.0
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 1.8e-07 59.7 88 40.9
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 1.8e-07 59.7 108 36.1
FAN07G2456 Fragaria x ananassa HOM05D000519 ORTHO05D019175 1.8e-07 59.7 85 40.0
Manes.08G041000 Manihot esculenta HOM05D000519 ORTHO05D000959 1.8e-07 59.7 88 36.4
FvH4_4g30070 Fragaria vesca HOM05D000519 ORTHO05D019175 2.3e-07 59.3 120 38.3
Hma1.2p1_0657F.1_g197050 Hydrangea macrophylla HOM05D000519 ORTHO05D000959 2.3e-07 59.3 111 36.9
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 3.0e-07 58.9 117 37.6
CAN.G1263.18 Capsicum annuum HOM05D000519 ORTHO05D000959 4.0e-07 58.5 76 42.1
Dinv13973 Davidia involucrata HOM05D000519 ORTHO05D000959 4.0e-07 58.5 100 36.0
FAN12G3268 Fragaria x ananassa HOM05D000519 ORTHO05D019175 4.0e-07 58.5 85 41.2
Psat1g175600 Pisum sativum HOM05D000519 ORTHO05D000959 4.0e-07 58.5 109 33.0
Rhsim13G0144500 Rhododendron simsii HOM05D000519 ORTHO05D000959 4.0e-07 58.5 117 34.2
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 5.2e-07 58.2 100 36.0
CAN.G1529.1 Capsicum annuum HOM05D000519 ORTHO05D000959 5.2e-07 58.2 76 43.4
FvH4_4g30060 Fragaria vesca HOM05D000519 ORTHO05D019175 5.2e-07 58.2 85 41.2
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 5.2e-07 58.2 112 34.8
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 5.2e-07 58.2 112 34.8
Sopen05g032610 Solanum pennellii HOM05D000519 ORTHO05D000959 5.2e-07 58.2 77 45.5
PGSC0003DMG400008460 Solanum tuberosum HOM05D000519 ORTHO05D000959 6.8e-07 57.8 93 40.9
Solyc05g054120.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 8.9e-07 57.4 77 42.9
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 1.2e-06 57.0 113 34.5
CSS0026174 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 1.2e-06 57.0 121 38.0
Eucgr.E03919 Eucalyptus grandis HOM05D000519 ORTHO05D000959 1.2e-06 57.0 100 35.0
Psat4g004160 Pisum sativum HOM05D000519 ORTHO05D000959 1.2e-06 57.0 110 31.8
Aa31sc265G20 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.5e-06 56.6 97 36.1
CAN.G64.24 Capsicum annuum HOM05D000519 ORTHO05D000959 1.5e-06 56.6 85 36.5
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 1.5e-06 56.6 99 37.4
Cc09_g00790 Coffea canephora HOM05D000519 ORTHO05D000959 2.0e-06 56.2 120 31.7
Lsat_1_v5_gn_1_114580 Lactuca sativa HOM05D000519 ORTHO05D000959 2.0e-06 56.2 89 38.2
Sopen11g007140 Solanum pennellii HOM05D000519 ORTHO05D000959 2.0e-06 56.2 112 35.7
BcaC06g34241 Brassica carinata HOM05D000519 ORTHO05D000959 2.6e-06 55.8 113 34.5
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 2.6e-06 55.8 113 34.5
ClCG01G010410 Citrullus lanatus HOM05D000519 ORTHO05D000959 2.6e-06 55.8 115 38.3
Medtr4g017620 Medicago truncatula HOM05D000519 ORTHO05D000959 2.6e-06 55.8 95 33.7
Sed0013622 Sechium edule HOM05D000519 ORTHO05D000959 2.6e-06 55.8 88 37.5
A06p44980 Brassica napus HOM05D000519 ORTHO05D000959 3.4e-06 55.5 113 33.6
BraA06t27369Z Brassica rapa HOM05D000519 ORTHO05D000959 3.4e-06 55.5 113 33.6
Peaxi162Scf00610g00115 Petunia axillaris HOM05D000519 ORTHO05D000959 3.4e-06 55.5 89 38.2
SHI24454 Sapria himalayana HOM05D000519 ORTHO05D000959 3.4e-06 55.5 101 39.6
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 4.4e-06 55.1 91 38.5
HPP92_014276 Vanilla planifolia HOM05D000519 ORTHO05D000959 4.4e-06 55.1 96 38.5
Aa31LG2G12570 Aethionema arabicum HOM05D000519 ORTHO05D019510 5.7e-06 54.7 74 40.5
FvH4_3g07950 Fragaria vesca HOM05D000519 ORTHO05D000959 5.7e-06 54.7 114 36.0
FAN16G1004 Fragaria x ananassa HOM05D000519 ORTHO05D000959 5.7e-06 54.7 114 36.0
Lsat_1_v5_gn_1_114540 Lactuca sativa HOM05D000519 ORTHO05D000959 5.7e-06 54.7 119 31.1
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 5.7e-06 54.7 100 33.0
Aa31LG9G7070 Aethionema arabicum HOM05D000519 ORTHO05D000959 7.5e-06 54.3 98 34.7
BcaC06g31370 Brassica carinata HOM05D000519 ORTHO05D000959 7.5e-06 54.3 102 36.3
FAN12G3560 Fragaria x ananassa HOM05D000519 ORTHO05D019175 7.5e-06 54.3 84 36.9
BcaB07g30638 Brassica carinata HOM05D000519 ORTHO05D000959 9.8e-06 53.9 102 39.2
BraA09t38071Z Brassica rapa HOM05D000519 ORTHO05D000959 9.8e-06 53.9 91 37.4
CAN.G370.1 Capsicum annuum HOM05D000519 ORTHO05D000959 9.8e-06 53.9 112 33.0
CAN.G64.23 Capsicum annuum HOM05D000519 ORTHO05D000959 9.8e-06 53.9 114 33.3
Ciclev10017209m.g Citrus clementina HOM05D000519 ORTHO05D000959 9.8e-06 53.9 114 31.6
FAN12G0917 Fragaria x ananassa HOM05D000519 ORTHO05D019175 9.8e-06 53.9 136 32.4
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 9.8e-06 53.9 91 37.4


User provided reference genes

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