Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.1e-101 373.2 182 100.0
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.7e-89 331.6 168 95.2
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.8e-89 331.3 168 95.2
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.2e-89 330.5 168 94.6
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 1.4e-88 329.7 168 94.6
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.1e-88 328.2 167 95.2
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.1e-88 328.2 168 97.0
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 7.0e-88 327.4 168 94.0
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 9.1e-88 327.0 167 94.6
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 5.9e-87 324.3 168 95.2
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 9.7e-82 307.0 168 88.7
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 8.5e-78 293.9 152 95.4
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 5.5e-77 291.2 167 83.2
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.1e-76 289.3 168 81.5
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 3.4e-74 282.0 168 81.0
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.2e-73 279.3 174 75.3
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 2.8e-73 278.9 168 80.4
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 3.7e-73 278.5 168 81.5
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.7e-73 278.5 168 79.2
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.7e-73 278.5 168 79.8
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 6.3e-73 277.7 168 78.6
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 1.1e-72 276.9 168 81.0
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 1.8e-72 276.2 168 78.6
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.4e-72 275.8 168 78.0
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 2.4e-72 275.8 168 79.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 3.1e-72 275.4 168 77.4
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 7.0e-72 274.2 168 79.2
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 7.0e-72 274.2 168 77.4
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.2e-71 273.5 168 78.6
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 2.7e-71 272.3 169 79.3
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 7.7e-71 270.8 168 80.4
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.7e-71 270.8 168 80.4
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 7.7e-71 270.8 168 80.4
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 7.7e-71 270.8 168 74.4
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 7.7e-71 270.8 168 78.0
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.0e-70 270.4 168 77.4
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 1.3e-70 270.0 168 79.2
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.3e-70 270.0 168 79.2
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 1.7e-70 269.6 168 79.8
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.2e-70 269.2 168 76.2
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 2.2e-70 269.2 173 78.0
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 2.9e-70 268.9 168 76.2
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 2.9e-70 268.9 168 78.6
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 3.8e-70 268.5 168 76.8
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 8.5e-70 267.3 167 76.6
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 8.5e-70 267.3 168 76.8
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.1e-69 266.9 168 76.2
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.1e-69 266.9 168 78.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.1e-69 266.9 168 78.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.1e-69 266.9 168 78.0
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.5e-69 266.5 173 78.6
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.5e-69 266.5 169 77.5
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 1.9e-69 266.2 168 77.4
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 2.5e-69 265.8 168 77.4
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.5e-69 265.8 168 75.6
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 2.5e-69 265.8 168 76.2
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 3.2e-69 265.4 166 74.7
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 4.2e-69 265.0 168 78.6
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 5.5e-69 264.6 168 76.8
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 9.4e-69 263.8 168 73.2
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 9.4e-69 263.8 152 82.2
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.4e-69 263.8 168 79.2
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 9.4e-69 263.8 168 75.0
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.2e-68 263.5 168 77.4
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.2e-68 263.5 168 77.4
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 1.2e-68 263.5 168 77.4
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.6e-68 263.1 168 75.0
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 1.6e-68 263.1 175 74.9
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.1e-68 262.7 168 75.6
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 3.6e-68 261.9 168 74.4
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.6e-68 261.9 168 78.0
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 4.7e-68 261.5 170 76.5
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 4.7e-68 261.5 177 72.3
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 8.0e-68 260.8 170 75.9
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 8.0e-68 260.8 168 76.2
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.4e-67 260.0 168 74.4
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 2.3e-67 259.2 168 73.8
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.3e-67 259.2 168 75.0
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 5.2e-67 258.1 168 73.2
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 5.2e-67 258.1 161 76.4
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 5.2e-67 258.1 167 75.4
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 8.8e-67 257.3 168 73.8
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 8.8e-67 257.3 168 73.8
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 8.8e-67 257.3 168 73.8
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 8.8e-67 257.3 168 73.8
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 8.8e-67 257.3 168 75.0
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 8.8e-67 257.3 168 73.8
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.2e-66 256.9 166 74.1
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 1.2e-66 256.9 169 71.6
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.5e-66 256.5 168 72.6
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 2.0e-66 256.1 168 73.2
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 2.0e-66 256.1 166 74.1
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.6e-66 255.8 168 73.2
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 4.4e-66 255.0 168 74.4
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 7.5e-66 254.2 158 77.2
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 7.5e-66 254.2 168 73.8
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 7.5e-66 254.2 168 73.2
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 9.8e-66 253.8 168 74.4
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 2.2e-65 252.7 168 70.8
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 2.8e-65 252.3 168 70.8
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 2.8e-65 252.3 167 74.3
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 3.7e-65 251.9 154 80.5
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 3.7e-65 251.9 168 72.6
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.4e-64 250.0 168 70.8
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.8e-64 249.6 168 71.4
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 3.1e-64 248.8 168 70.8
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 4.1e-64 248.4 169 69.2
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 4.1e-64 248.4 220 61.8
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 4.1e-64 248.4 172 70.9
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 5.4e-64 248.1 164 73.8
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 7.0e-64 247.7 164 73.2
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 9.2e-64 247.3 168 72.6
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 9.2e-64 247.3 167 71.3
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.2e-63 246.9 168 69.6
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 2.0e-63 246.1 168 70.2
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 2.7e-63 245.7 168 70.2
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 5.9e-63 244.6 172 66.3
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 7.7e-63 244.2 157 73.9
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.7e-62 243.0 168 72.0
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.9e-62 242.3 172 65.7
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 3.8e-62 241.9 168 67.3
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 2.5e-61 239.2 156 73.7
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 2.5e-61 239.2 156 73.7
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 3.3e-61 238.8 166 67.5
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 2.8e-60 235.7 169 68.0
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 3.6e-60 235.3 167 68.9
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 3.6e-60 235.3 168 66.1
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 3.6e-60 235.3 168 66.1
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 1.8e-59 233.0 169 65.7
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 2.0e-58 229.6 168 67.3
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 9.8e-58 227.3 159 70.4
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 2.3e-54 216.1 176 61.4
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 5.0e-54 214.9 165 61.8
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 2.8e-52 209.1 168 60.7
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 3.6e-52 208.8 147 73.5
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 6.2e-52 208.0 168 60.1
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 2.0e-42 176.4 115 72.2
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 5.8e-42 174.9 115 72.2
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 7.5e-42 174.5 131 70.2
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 2.9e-41 172.6 115 73.0
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 2.9e-41 172.6 115 73.0
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 3.7e-41 172.2 115 73.0
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 3.7e-41 172.2 115 73.0
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.1e-37 160.6 86 84.9
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.9e-37 159.8 182 45.6
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 2.1e-36 156.4 166 45.8
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 5.8e-34 148.3 109 70.6
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 4.9e-33 145.2 95 72.6
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 8.4e-33 144.4 99 67.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.9e-32 143.3 106 65.1
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.4e-32 141.7 103 66.0
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.7e-23 112.8 60 80.0
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 2.7e-23 112.8 169 40.2
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.4e-19 99.8 48 100.0
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 2.4e-19 99.8 169 36.7
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 1.2e-18 97.4 54 85.2
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.0e-18 96.7 86 57.0
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 4.5e-18 95.5 50 94.0
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 8.4e-17 91.3 52 84.6
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.1e-16 90.9 128 40.6
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.2e-16 89.4 118 43.2
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 9.6e-13 77.8 75 54.7
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-10 69.3 92 43.5
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 2.9e-09 66.2 35 85.7
FAN08G0416 Fragaria x ananassa HOM05D004471 ORTHO05D203975 8.7e-06 54.7 46 65.2


User provided reference genes

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