Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 5.4e-153 544.3 273 100.0
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 5.5e-129 464.5 302 79.5
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 4.8e-117 424.9 302 73.8
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 6.1e-112 407.9 300 70.7
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.0e-110 402.9 300 70.3
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.2e-109 399.4 314 67.5
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.1e-108 397.1 300 69.0
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.1e-108 395.6 300 69.0
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 4.1e-108 395.2 299 69.6
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.0e-107 392.9 314 65.9
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 7.7e-107 391.0 319 65.8
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 9.4e-105 384.0 304 65.8
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.3e-103 379.4 332 62.0
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 5.2e-103 378.3 299 66.6
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 5.7e-102 374.8 302 63.9
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.1e-97 360.5 300 63.0
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 3.2e-97 359.0 304 61.8
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 9.4e-97 357.5 283 62.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 3.0e-95 352.4 305 62.0
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 8.8e-95 350.9 301 60.8
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 2.0e-94 349.7 301 60.5
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 4.4e-94 348.6 301 62.1
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 5.7e-94 348.2 301 61.5
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 9.7e-94 347.4 295 63.7
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 2.8e-93 345.9 301 62.1
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 4.1e-92 342.0 300 60.3
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.2e-91 340.5 302 57.9
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.5e-89 333.6 289 62.6
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 5.5e-89 331.6 303 60.1
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 7.2e-89 331.3 299 59.2
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.6e-88 330.1 303 60.4
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 2.1e-88 329.7 303 59.7
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 3.6e-88 328.9 300 58.7
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 4.0e-87 325.5 307 59.0
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 8.8e-87 324.3 298 57.4
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 8.8e-87 324.3 299 57.9
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 4.4e-86 322.0 302 57.9
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 4.4e-86 322.0 277 60.6
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 7.5e-86 321.2 365 50.7
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.3e-85 320.5 289 59.9
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 2.8e-85 319.3 272 62.1
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 4.8e-85 318.5 303 56.1
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 6.3e-85 318.2 303 58.1
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 6.3e-85 318.2 299 56.5
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 4.1e-84 315.5 298 56.7
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.4e-84 315.1 231 68.4
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 9.1e-84 314.3 332 53.0
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 3.5e-83 312.4 287 60.3
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.3e-82 310.5 328 54.0
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.3e-82 310.5 313 55.3
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.3e-82 310.5 247 64.4
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 8.6e-82 307.8 314 54.1
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.1e-81 307.4 316 54.4
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.5e-81 307.0 320 54.1
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 3.3e-81 305.8 243 62.1
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 7.2e-81 304.7 219 68.0
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 9.5e-81 304.3 301 55.5
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.2e-80 303.9 219 68.9
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 1.2e-80 303.9 302 55.0
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.6e-80 303.5 241 63.9
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 8.0e-80 301.2 313 54.0
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 8.0e-80 301.2 298 55.7
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.0e-79 300.8 272 59.9
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.8e-79 300.1 311 55.0
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 6.8e-79 298.1 235 65.5
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 1.2e-78 297.4 274 60.6
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 2.6e-78 296.2 312 53.2
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 4.4e-78 295.4 315 53.0
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 5.7e-78 295.0 270 58.1
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 5.7e-78 295.0 328 52.4
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 2.2e-77 293.1 317 52.4
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.3e-77 291.6 295 53.6
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 8.3e-77 291.2 328 51.5
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.1e-76 290.8 295 52.5
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.4e-76 290.4 236 64.0
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 2.0e-75 286.6 284 58.1
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 2.7e-75 286.2 276 57.6
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.0e-74 284.3 205 67.8
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 5.0e-74 282.0 232 59.9
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 8.6e-74 281.2 274 56.9
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 7.3e-73 278.1 197 70.6
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 1.2e-72 277.3 253 58.9
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 3.1e-71 272.7 226 62.4
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 6.8e-71 271.6 177 78.5
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 3.7e-69 265.8 205 67.8
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 4.9e-69 265.4 216 60.6
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.4e-63 247.3 175 70.3
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.5e-62 243.8 271 52.8
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 4.3e-57 225.7 230 53.9
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.4e-55 220.7 185 63.2
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 8.9e-55 218.0 466 35.0
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.3e-50 204.1 254 49.2
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 8.6e-50 201.4 180 57.8
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 9.3e-44 181.4 217 46.1
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.7e-42 177.2 242 42.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.3e-40 171.0 288 41.0
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 1.6e-40 170.6 219 46.6
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 2.1e-40 170.2 212 43.4
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 2.8e-40 169.9 274 37.6
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 2.0e-38 163.7 247 43.3
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 2.6e-38 163.3 156 53.8
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 2.6e-38 163.3 261 41.0
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 1.9e-36 157.1 261 39.5
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 4.2e-36 156.0 126 63.5
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.0e-34 151.4 132 63.6
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.8e-31 140.6 263 39.2
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 3.0e-26 123.2 71 76.1
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.1e-24 117.1 70 72.9
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.2e-22 111.3 57 93.0
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.3e-21 107.8 91 63.7
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.9e-20 104.0 159 40.9
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.4e-15 87.8 206 29.1
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 9.0e-15 85.1 97 51.5
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 2.5e-12 77.0 85 47.1
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.3e-10 71.2 52 63.5
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 3.0e-10 70.1 125 36.8
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 7.4e-09 65.5 96 41.7
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.3 39 76.9
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.3 39 76.9
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.3 39 76.9
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.3 39 76.9
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.3 39 76.9
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.3 39 76.9
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.6e-08 64.3 39 76.9
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 8.2e-08 62.0 69 47.8
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 1.4e-07 61.2 69 47.8
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 1.4e-07 61.2 69 47.8
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 2.4e-07 60.5 96 39.6
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 1.5e-06 57.8 91 38.5
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 4.5e-06 56.2 83 39.8
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 4.5e-06 56.2 85 38.8
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-06 55.8 85 38.8
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 7.7e-06 55.5 66 45.5
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 1.0e-05 55.1 85 37.6
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 1.0e-05 55.1 85 37.6


User provided reference genes

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