Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G330500 Prunus persica HOM05D006710 ORTHO05D008353 6.0e-138 494.2 252 100.0
MD04G1209500 Malus domestica HOM05D006710 ORTHO05D008353 3.2e-115 418.7 255 86.3
MD12G1224100 Malus domestica HOM05D006710 ORTHO05D008353 2.4e-110 402.5 253 84.2
Haze_04239 Corylus avellana HOM05D006710 ORTHO05D008353 9.3e-99 364.0 250 75.6
FAN05G4089 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.6e-98 363.2 255 73.7
RcHm_v2.0_Chr3g0454051 Rosa chinensis HOM05D006710 ORTHO05D008353 7.9e-98 360.9 255 75.3
Cfa006542 Carpinus fangiana HOM05D006710 ORTHO05D008353 1.0e-97 360.5 253 74.7
QL03p004347 Quercus lobata HOM05D006710 ORTHO05D008353 1.5e-96 356.7 248 75.4
FAN14G5365 Fragaria x ananassa HOM05D006710 ORTHO05D008353 2.5e-96 355.9 269 69.5
CiPaw.08G166900 Carya illinoinensis HOM05D006710 ORTHO05D008353 2.1e-95 352.8 252 74.2
FAN09G4503 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.4e-93 345.5 295 64.7
Dinv40255 Davidia involucrata HOM05D006710 ORTHO05D008353 7.1e-91 337.8 249 70.7
Sabra13G0027300 Salix brachista HOM05D006710 ORTHO05D008353 9.3e-91 337.4 254 70.9
Manes.09G163400 Manihot esculenta HOM05D006710 ORTHO05D008353 2.7e-90 335.9 249 71.1
Actinidia23607 Actinidia chinensis HOM05D006710 ORTHO05D008353 9.6e-88 327.4 253 70.0
Rhsim07G0179500 Rhododendron simsii HOM05D006710 ORTHO05D008353 9.6e-88 327.4 252 69.0
Thecc.05G308800 Theobroma cacao HOM05D006710 ORTHO05D008353 1.6e-87 326.6 249 69.9
Ciclev10002268m.g Citrus clementina HOM05D006710 ORTHO05D008353 2.8e-87 325.9 243 68.7
Potri.013G026500 Populus trichocarpa HOM05D006710 ORTHO05D008353 3.7e-87 325.5 253 68.8
TWI12G0766 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 1.4e-86 323.6 250 69.2
Atru.chr2.492 Acer truncatum HOM05D006710 ORTHO05D008353 3.1e-86 322.4 254 70.1
FAN14G4294 Fragaria x ananassa HOM05D006710 ORTHO05D008353 3.1e-86 322.4 263 67.3
CANSAT54G0344 Cannabis sativa HOM05D006710 ORTHO05D008353 4.0e-86 322.0 253 69.2
Actinidia05724 Actinidia chinensis HOM05D006710 ORTHO05D008353 5.3e-86 321.6 249 69.9
CSS0018519 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 1.5e-85 320.1 220 73.6
TWI56G0551 Tripterygium wilfordii HOM05D006710 ORTHO05D008353 2.0e-85 319.7 249 68.3
Nn4g26145 Nelumbo nucifera HOM05D006710 ORTHO05D008353 5.8e-85 318.2 255 67.1
CSS0006596 Camellia sinensis var. sinensis HOM05D006710 ORTHO05D008353 2.2e-84 316.2 249 68.3
PGR031G3544 Punica granatum HOM05D006710 ORTHO05D008353 2.2e-84 316.2 223 71.3
CsaV3_2G004900 Cucumis sativus L. HOM05D006710 ORTHO05D008353 2.5e-83 312.8 249 66.7
vmacro05032 Vaccinium macrocarpon HOM05D006710 ORTHO05D008353 4.2e-83 312.0 216 73.6
Duzib177G0772 Durio zibethinus HOM05D006710 ORTHO05D008353 5.5e-83 311.6 249 66.3
Cpa.g.sc48.8 Carica papaya HOM05D006710 ORTHO05D008353 9.3e-83 310.8 252 66.7
AUR62005111 Chenopodium quinoa HOM05D006710 ORTHO05D008353 9.3e-83 310.8 253 67.2
THA.LOC104802809 Tarenaya hassleriana HOM05D006710 ORTHO05D008353 9.3e-83 310.8 255 67.5
Gorai.013G204100 Gossypium raimondii HOM05D006710 ORTHO05D008353 1.2e-82 310.5 249 65.1
Peaxi162Scf00071g00728 Petunia axillaris HOM05D006710 ORTHO05D008353 4.6e-82 308.5 249 68.3
arahy.Tifrunner.gnm1.ann1.ACRB0G Arachis hypogaea HOM05D006710 ORTHO05D008353 1.3e-81 307.0 234 67.9
EL10Ac4g09302 Beta vulgaris HOM05D006710 ORTHO05D008353 1.3e-81 307.0 253 65.6
AUR62000864 Chenopodium quinoa HOM05D006710 ORTHO05D008353 1.8e-81 306.6 253 66.0
PGSC0003DMG400026653 Solanum tuberosum HOM05D006710 ORTHO05D008353 2.3e-81 306.2 250 64.0
arahy.Tifrunner.gnm1.ann1.KZLY5F Arachis hypogaea HOM05D006710 ORTHO05D008353 3.0e-81 305.8 234 67.5
Gohir.A13G173100 Gossypium hirsutum HOM05D006710 ORTHO05D008353 5.1e-81 305.1 249 63.9
Gohir.D13G178900 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.1e-80 303.9 249 63.9
Eucgr.H04455 Eucalyptus grandis HOM05D006710 ORTHO05D008353 2.5e-80 302.8 253 64.4
HanXRQChr09g0258761 Helianthus annuus HOM05D006710 ORTHO05D008353 3.3e-80 302.4 250 63.6
Sed0009429 Sechium edule HOM05D006710 ORTHO05D008353 3.3e-80 302.4 259 62.9
Sopen08g012960 Solanum pennellii HOM05D006710 ORTHO05D008353 7.4e-80 301.2 250 63.2
Sp2g20620 Schrenkiella parvula HOM05D006710 ORTHO05D008353 9.7e-80 300.8 252 63.9
Solyc08g043180.3 Solanum lycopersicum HOM05D006710 ORTHO05D008353 2.8e-79 299.3 215 69.3
MSTRG.20477 Avicennia marina HOM05D006710 ORTHO05D008353 3.7e-79 298.9 254 63.4
CARHR185990 Cardamine hirsuta HOM05D006710 ORTHO05D008353 4.8e-79 298.5 256 63.3
Lj9A681T40 Lonicera japonica HOM05D006710 ORTHO05D008353 4.8e-79 298.5 282 59.6
CAN.G809.16 Capsicum annuum HOM05D006710 ORTHO05D008353 8.2e-79 297.7 229 66.8
AL6G39620 Arabidopsis lyrata HOM05D006710 ORTHO05D008353 1.1e-78 297.4 252 63.5
COL.COLO4_13519 Corchorus olitorius HOM05D000735 ORTHO05D000838 1.4e-78 297.0 235 67.7
BcaNung04366 Brassica carinata HOM05D006710 ORTHO05D008353 2.4e-78 296.2 254 64.6
ClCG02G016080 Citrullus lanatus HOM05D006710 ORTHO05D008353 4.1e-78 295.4 247 64.0
Carub.0006s2515 Capsella rubella HOM05D006710 ORTHO05D008353 6.9e-78 294.7 253 64.0
AT5G27390 Arabidopsis thaliana HOM05D006710 ORTHO05D008353 9.0e-78 294.3 253 64.0
Gohir.D11G272800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 1.5e-77 293.5 248 61.7
Gorai.007G294100 Gossypium raimondii HOM05D006710 ORTHO05D008353 1.5e-77 293.5 248 61.7
ECA232G0378 Erigeron canadensis HOM05D006710 ORTHO05D008353 3.4e-77 292.4 254 61.8
BcaNung02465 Brassica carinata HOM05D006710 ORTHO05D008353 4.5e-77 292.0 253 63.6
Nitab4.5_0010747g0020 Nicotiana tabacum HOM05D006710 ORTHO05D008353 4.5e-77 292.0 241 64.7
SalBow8G3090 Salvia bowleyana HOM05D006710 ORTHO05D008353 7.7e-77 291.2 174 78.7
Nitab4.5_0000424g0030 Nicotiana tabacum HOM05D006710 ORTHO05D008353 1.7e-76 290.0 243 66.3
Thhalv10004765m.g Eutrema salsugineum HOM05D006710 ORTHO05D008353 2.2e-76 289.7 254 62.6
MBI19_g27535_MAGBIO Magnolia biondii HOM05D006710 ORTHO05D008353 1.6e-74 283.5 258 61.6
Lalb_Chr02g0148381 Lupinus albus HOM05D006710 ORTHO05D008353 3.6e-74 282.3 239 64.0
C07p40720 Brassica napus HOM05D006710 ORTHO05D008353 4.6e-74 282.0 265 60.8
BolC7t44600H Brassica oleracea HOM05D006710 ORTHO05D008353 4.6e-74 282.0 265 60.8
Aqoxy2G03215 Aquilegia oxysepala HOM05D006710 ORTHO05D008353 6.1e-74 281.6 250 62.4
A06p37590 Brassica napus HOM05D006710 ORTHO05D008353 3.0e-73 279.3 263 61.2
CDE08G1170 Ceratophyllum demersum HOM05D006710 ORTHO05D008353 3.9e-73 278.9 257 60.3
unitig_0.g2209 Utricularia gibba HOM05D006710 ORTHO05D008353 5.1e-73 278.5 248 60.5
Lalb_Chr15g0077091 Lupinus albus HOM05D006710 ORTHO05D008353 8.8e-73 277.7 237 62.0
Migut.B01148 Erythranthe guttata HOM05D006710 ORTHO05D008353 2.0e-72 276.6 256 59.4
Glyma.10G157000 Glycine max HOM05D006710 ORTHO05D008353 2.5e-72 276.2 237 62.4
Ca_10089_v3 Cicer arietinum L. HOM05D006710 ORTHO05D008353 3.3e-72 275.8 229 64.2
Sc09g0003360 Simmondsia chinensis HOM05D006710 ORTHO05D006029 3.3e-72 275.8 162 80.2
PSO170G1405 Papaver somniferum HOM05D006710 ORTHO05D008353 7.4e-72 274.6 255 57.3
PSO407G0185 Papaver somniferum HOM05D006710 ORTHO05D008353 9.7e-72 274.2 255 57.3
Hund07043 Selenicereus undatus HOM05D006710 ORTHO05D008353 9.7e-72 274.2 258 58.5
Os05g0401300 Oryza sativa ssp. japonica HOM05D006710 ORTHO05D008353 1.7e-71 273.5 254 55.1
VMungo0720G2835 Vigna mungo HOM05D006710 ORTHO05D008353 3.7e-71 272.3 253 58.9
Ah.06g190140 Amaranthus hybridus HOM05D006710 ORTHO05D008353 6.3e-71 271.6 253 59.7
Phvul.007G182300 Phaseolus vulgaris HOM05D006710 ORTHO05D008353 1.1e-70 270.8 253 58.9
ATR0626G338 Amborella trichopoda HOM05D006710 ORTHO05D008353 5.3e-70 268.5 240 58.8
Zm00001eb346790 Zea mays HOM05D006710 ORTHO05D008353 6.5e-68 261.5 252 54.4
Lj5g0024082 Lotus japonicus HOM05D006710 ORTHO05D008353 1.1e-67 260.8 253 57.7
Aa31LG11G9170 Aethionema arabicum HOM05D006710 ORTHO05D008353 2.7e-66 256.1 279 54.1
HPP92_013667 Vanilla planifolia HOM05D006710 ORTHO05D008353 2.7e-66 256.1 212 62.3
Psat6g148920 Pisum sativum HOM05D006710 ORTHO05D008353 2.3e-65 253.1 253 54.9
TAR362G0522 Trochodendron aralioides HOM05D006710 ORTHO05D008353 3.9e-65 252.3 144 85.4
SGA_v2.0_scaffold244G44356 Striga asiatica HOM05D006710 ORTHO05D008353 1.1e-64 250.8 219 58.4
Medtr1g082430 Medicago truncatula HOM05D006710 ORTHO05D008353 7.4e-64 248.1 254 55.5
Gohir.A11G262800 Gossypium hirsutum HOM05D006710 ORTHO05D008353 4.1e-62 242.3 217 58.5
BraA06t26678Z Brassica rapa HOM05D006710 ORTHO05D008353 1.2e-61 240.7 242 59.1
GSVIVG01000003001 Vitis vinifera HOM05D006710 ORTHO05D008353 1.5e-61 240.4 144 81.2
Lsat_1_v5_gn_8_116001 Lactuca sativa HOM05D006710 ORTHO05D008353 4.5e-61 238.8 218 58.3
SEGI_09082 Sequoiadendron giganteum HOM05D006710 ORTHO05D008353 2.2e-60 236.5 185 60.0
FAN05G4701 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.9e-59 233.4 243 56.8
CDE02G4396 Ceratophyllum demersum HOM05D000137 ORTHO05D000503 9.1e-54 214.5 210 57.1
FvH4_6g05310 Fragaria vesca HOM05D006710 ORTHO05D008353 1.1e-51 207.6 167 66.5
MELO3C004308.2 Cucumis melo HOM05D006710 ORTHO05D008353 3.0e-49 199.5 177 63.3
TPR.G327 Trifolium pratense HOM05D006710 ORTHO05D008353 2.0e-48 196.8 171 60.8
AagrBONN_evm.TU.Sc2ySwM_368.548 Anthoceros agrestis HOM05D006710 ORTHO05D008353 3.4e-48 196.1 185 50.3
Glyma.20G231700 Glycine max HOM05D006710 ORTHO05D008353 1.6e-45 187.2 134 67.9
FAN02G1407 Fragaria x ananassa HOM05D006710 ORTHO05D008353 1.3e-44 184.1 139 69.8
Mapoly0057s0090 Marchantia polymorpha HOM05D006710 ORTHO05D008353 5.2e-41 172.2 183 47.0
Pp3c11_21800 Physcomitrium patens HOM05D006710 ORTHO05D008353 1.1e-38 164.5 185 42.2
Cc02_g32640 Coffea canephora HOM05D006710 ORTHO05D008353 9.1e-38 161.4 95 82.1
Cc02_g32660 Coffea canephora HOM05D006710 ORTHO05D008353 1.2e-37 161.0 158 58.9
SMO356G0400 Selaginella moellendorffii HOM05D006710 ORTHO05D008353 1.3e-36 157.5 233 39.9
DCAR_022246 Daucus carota HOM05D006710 ORTHO05D008353 1.4e-33 147.5 147 55.1
EL10Ac7g17500 Beta vulgaris HOM05D006710 ORTHO05D008353 6.1e-26 122.1 96 64.6
Thecc.05G311300 Theobroma cacao HOM05D000126 ORTHO05D008353 9.2e-22 108.2 68 72.1
CBR_g32459 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-14 84.7 210 30.0
MCO13G061 Micromonas commoda HOM05D006710 ORTHO05D008353 1.9e-14 84.0 132 34.1
Cre13.g564050 Chlamydomonas reinhardtii HOM05D006710 ORTHO05D008353 8.6e-12 75.1 197 26.9
PRCOL_00002748 Prasinoderma coloniale HOM05D006710 ORTHO05D008353 2.0e-08 63.9 139 29.5


User provided reference genes

Program Settings