Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 1.2e-160 569.7 270 100.0
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 1.2e-131 473.4 274 82.1
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 1.3e-119 433.3 272 79.0
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 3.9e-119 431.8 272 77.9
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 6.6e-119 431.0 268 79.5
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.9e-118 429.5 268 79.1
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 7.3e-118 427.6 268 78.7
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.8e-117 425.6 268 78.4
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 6.0e-112 407.9 259 74.9
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.3e-111 406.8 258 75.2
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 5.8e-107 391.3 272 69.9
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 1.2e-104 383.6 273 67.8
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 7.9e-104 380.9 254 76.0
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 1.3e-103 380.2 273 68.9
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 6.7e-103 377.9 268 69.4
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 4.3e-102 375.2 269 65.8
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 5.6e-102 374.8 259 69.1
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 9.6e-102 374.0 266 67.7
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 6.2e-101 371.3 269 65.4
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 8.1e-101 370.9 256 68.8
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 2.4e-100 369.4 268 66.0
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 3.1e-100 369.0 265 65.7
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 4.9e-98 361.7 264 65.9
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 8.4e-98 360.9 263 65.4
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.1e-97 360.5 251 67.7
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 2.5e-97 359.4 265 64.5
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 2.5e-97 359.4 245 68.2
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 3.2e-97 359.0 258 67.4
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 1.2e-96 357.1 257 66.5
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 2.1e-96 356.3 274 65.3
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 4.6e-96 355.1 266 63.2
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 1.3e-95 353.6 257 65.4
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.8e-95 353.2 259 65.3
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 1.1e-94 350.5 251 66.1
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 3.3e-94 349.0 279 60.6
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 4.3e-94 348.6 259 64.5
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 5.7e-94 348.2 261 64.8
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 7.4e-94 347.8 258 65.5
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 4.8e-93 345.1 270 63.7
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 4.8e-93 345.1 258 64.7
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 1.8e-92 343.2 266 62.8
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 2.2e-90 336.3 255 60.8
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 4.2e-89 332.0 257 60.7
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 7.1e-89 331.3 258 62.8
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 9.3e-89 330.9 258 60.9
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.2e-88 330.5 259 61.0
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 1.2e-88 330.5 266 58.6
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 2.7e-88 329.3 258 62.0
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 1.0e-87 327.4 268 58.6
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.0e-87 327.4 258 60.5
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 3.0e-87 325.9 267 61.0
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 5.1e-87 325.1 265 58.1
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 6.7e-87 324.7 259 60.2
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 8.7e-87 324.3 262 60.7
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 8.7e-87 324.3 228 69.7
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.1e-86 323.9 269 61.3
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 9.7e-86 320.9 262 58.8
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 4.8e-85 318.5 272 58.1
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 6.3e-85 318.2 268 57.1
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 3.1e-84 315.8 264 58.3
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 5.3e-84 315.1 233 65.2
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 6.9e-84 314.7 261 59.8
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 1.2e-83 313.9 263 58.2
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 5.9e-83 311.6 263 57.8
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 7.7e-83 311.2 260 57.7
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 1.7e-82 310.1 261 59.4
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 2.2e-82 309.7 260 58.8
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 2.9e-82 309.3 259 58.3
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 6.5e-82 308.1 270 54.8
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 1.4e-81 307.0 260 58.5
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 3.6e-80 302.4 259 56.8
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 4.6e-80 302.0 264 56.8
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 2.0e-78 296.6 234 62.0
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 3.3e-78 295.8 245 59.6
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 9.7e-78 294.3 248 55.2
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 3.7e-77 292.4 252 57.5
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 1.1e-76 290.8 263 55.5
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.8e-76 290.0 229 62.9
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 4.1e-76 288.9 258 56.2
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 9.1e-76 287.7 239 60.3
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 2.0e-75 286.6 244 57.0
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 2.6e-75 286.2 239 60.7
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 2.6e-75 286.2 256 53.1
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 3.4e-75 285.8 239 60.7
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 5.9e-75 285.0 240 61.2
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 2.9e-74 282.7 255 52.9
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 5.0e-74 282.0 239 60.3
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.2e-72 277.3 215 62.3
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 3.6e-72 275.8 236 57.6
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 4.7e-72 275.4 277 51.3
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 1.0e-71 274.2 248 54.0
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 5.1e-71 271.9 229 61.1
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 7.0e-68 261.5 169 69.8
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 1.7e-66 256.9 156 73.7
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 2.5e-65 253.1 223 56.1
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 4.2e-65 252.3 255 51.8
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 5.2e-63 245.4 232 49.6
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 1.5e-62 243.8 144 83.3
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 3.7e-61 239.2 210 52.9
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 9.1e-60 234.6 259 45.6
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 8.0e-56 221.5 206 55.8
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.8e-52 210.3 168 58.9
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.7e-50 203.8 173 58.4
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 6.5e-50 201.8 254 43.7
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 8.5e-50 201.4 243 45.7
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 4.9e-45 185.7 118 81.4
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 7.7e-43 178.3 217 48.4
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.9e-41 173.7 243 42.0
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.8e-39 167.2 213 39.9
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.3e-37 161.0 222 40.5
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 2.2e-37 160.2 91 76.9
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 5.4e-36 155.6 237 42.6
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.6e-35 154.1 240 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 2.7e-35 153.3 225 36.9
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.0e-30 137.1 220 34.1
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.7e-29 134.0 168 44.0
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 9.2e-28 128.3 249 32.1
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 4.6e-27 125.9 129 54.3
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 1.5e-22 110.9 96 59.4
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.3e-21 107.8 59 84.7
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 7.1e-20 102.1 106 50.9
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-19 101.3 108 50.9
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 6.2e-16 89.0 125 44.0
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.7e-10 70.9 259 26.3
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 3.0e-10 70.1 56 62.5
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 5.6e-09 65.9 269 25.3
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 2.8e-08 63.5 128 30.5
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 4.7e-08 62.8 298 21.8
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 2.4e-07 60.5 225 27.1
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 3.1e-07 60.1 271 24.0
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 5.2e-07 59.3 91 35.2
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 8.9e-07 58.5 84 38.1
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 2.0e-06 57.4 270 21.9
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 3.4e-06 56.6 93 37.6
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 3.4e-06 56.6 257 23.7
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 7.6e-06 55.5 246 26.8
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 7.6e-06 55.5 124 29.8


User provided reference genes

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