Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.3e-213 746.1 388 100.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 6.0e-198 694.1 386 92.2
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.1e-194 683.3 388 90.5
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.6e-182 642.9 388 84.0
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.1e-180 636.7 388 82.7
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.7e-179 631.7 388 82.7
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.8e-178 629.4 387 83.2
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.2e-177 626.7 388 82.5
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.0e-176 623.6 388 82.2
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 7.2e-175 617.5 388 81.4
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 9.4e-175 617.1 388 81.2
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-173 612.8 388 81.2
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 3.9e-173 611.7 388 79.9
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.1e-172 610.1 390 80.5
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 2.0e-172 609.4 388 81.4
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.6e-172 609.0 388 80.7
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 3.3e-172 608.6 388 79.9
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 4.4e-172 608.2 388 80.4
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.4e-172 608.2 388 80.4
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.7e-171 605.1 388 78.9
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 9.1e-170 600.5 388 78.1
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.9e-169 597.8 420 75.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 5.9e-169 597.8 388 78.1
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.0e-168 597.0 388 77.6
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 2.9e-168 595.5 383 78.9
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 2.9e-168 595.5 383 78.6
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.8e-168 595.1 388 79.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 3.8e-168 595.1 383 78.9
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 5.0e-168 594.7 386 78.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.5e-168 594.3 420 74.8
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 6.5e-168 594.3 383 78.6
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 8.5e-168 594.0 388 77.3
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.4e-167 593.2 389 78.1
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.2e-167 590.9 420 74.3
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.2e-166 590.1 420 74.5
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.2e-166 590.1 388 78.1
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.6e-166 589.7 389 78.1
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 1.0e-165 587.0 385 77.9
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.4e-165 586.6 387 77.8
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.8e-165 586.3 388 77.6
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.8e-165 583.9 388 77.1
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 4.4e-164 581.6 386 75.6
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 7.4e-164 580.9 388 76.0
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 2.8e-163 578.9 389 77.1
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.7e-163 578.6 388 76.0
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 1.8e-162 576.2 385 75.1
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.6e-161 573.2 388 76.3
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 2.6e-161 572.4 406 73.6
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.5e-161 572.0 388 76.5
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 4.5e-161 571.6 393 76.6
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.3e-160 570.1 389 76.6
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 1.7e-160 569.7 383 75.7
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.9e-160 568.9 386 74.6
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 2.9e-160 568.9 383 76.2
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 3.8e-160 568.5 388 74.5
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.0e-160 568.2 390 75.4
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.5e-159 566.6 387 74.4
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.5e-159 566.6 389 76.3
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 2.5e-159 565.8 388 76.8
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 2.5e-159 565.8 388 76.8
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 4.2e-159 565.1 390 75.4
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 5.5e-159 564.7 387 75.2
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.1e-158 562.8 386 74.1
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.6e-158 562.0 388 73.7
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.8e-157 559.7 385 74.0
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.8e-157 559.7 386 74.6
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 6.7e-157 557.8 390 74.9
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 1.2e-156 557.0 390 73.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 5.7e-156 554.7 388 75.3
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.2e-155 552.7 387 72.6
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 2.8e-155 552.4 388 74.0
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.7e-155 552.0 388 73.5
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 8.2e-155 550.8 350 80.3
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.4e-154 549.3 385 73.5
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.5e-153 545.0 399 70.4
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.0e-152 543.9 414 70.3
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.7e-152 543.1 388 73.2
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.0e-152 541.6 385 73.5
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 7.2e-151 537.7 389 71.7
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.1e-150 536.2 349 77.9
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 8.0e-150 534.3 388 70.4
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 5.7e-148 528.1 348 77.6
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 1.7e-147 526.6 392 70.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.2e-147 526.2 386 71.2
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 8.3e-147 524.2 385 71.9
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.1e-146 522.3 386 69.9
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.1e-146 521.9 386 70.7
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.1e-146 520.8 388 69.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 9.1e-146 520.8 388 69.1
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 3.5e-145 518.8 386 69.2
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 4.5e-145 518.5 386 70.7
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 4.5e-145 518.5 385 70.9
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 7.7e-145 517.7 386 69.9
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 1.3e-144 516.9 387 70.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.3e-144 516.2 386 70.5
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.3e-144 516.2 386 70.5
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.8e-144 515.4 388 68.6
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 8.6e-144 514.2 386 69.4
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.6e-144 514.2 388 68.3
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.5e-143 512.7 385 69.1
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 3.3e-143 512.3 385 70.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 9.5e-143 510.8 348 75.0
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.1e-142 508.1 353 75.6
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 6.1e-142 508.1 385 68.8
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 3.7e-139 498.8 385 68.6
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 6.3e-139 498.0 385 68.6
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.8e-138 496.5 385 68.8
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 7.8e-137 491.1 347 72.3
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 5.0e-136 488.4 385 68.1
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 5.8e-132 474.9 383 66.1
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 5.8e-132 474.9 390 66.7
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 2.4e-130 469.5 385 65.5
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 4.1e-130 468.8 401 62.3
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.6e-129 466.8 390 65.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.7e-123 446.8 388 60.3
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 6.4e-123 444.9 394 59.6
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 8.3e-123 444.5 392 59.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 9.2e-122 441.0 397 61.5
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 8.6e-120 434.5 388 61.1
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 7.3e-119 431.4 377 60.2
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.2e-118 430.6 399 59.4
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.3e-112 409.8 388 59.5
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 7.1e-106 388.3 297 64.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.8e-101 373.6 271 70.8
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.3e-99 367.5 413 49.6
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 4.3e-95 352.4 299 65.6
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 3.0e-88 329.7 438 44.5
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.3e-87 326.2 226 73.5
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 5.8e-84 315.5 370 48.1
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 4.3e-79 299.3 266 57.9
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.5e-76 289.3 386 44.0
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 5.5e-58 229.2 470 34.9
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.2e-57 228.0 167 70.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.3e-55 219.9 152 80.3
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.1e-53 214.9 142 79.6
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 3.1e-53 213.4 243 48.1
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.7e-49 200.3 128 80.5
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.6e-44 184.5 175 61.7
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.3e-35 154.8 394 30.2
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 6.5e-35 152.5 89 86.5
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.5e-31 141.4 180 45.0
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 7.5e-31 139.0 149 55.0
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.1e-29 135.2 108 64.8
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.7e-27 127.9 155 51.0
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.6e-27 125.6 79 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.1e-26 125.2 213 39.4
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-25 119.8 138 53.6
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 5.7e-23 112.8 120 54.2
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 3.5e-20 103.6 83 62.7
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 4.7e-17 93.2 82 59.8
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 4.7e-17 93.2 106 48.1
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.0e-17 92.4 127 48.8
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 1.0e-16 92.0 99 53.5
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 2.3e-16 90.9 127 47.2
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 5.4e-13 79.7 100 49.0
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 5.4e-13 79.7 84 51.2
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 7.0e-13 79.3 54 68.5
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 7.0e-13 79.3 125 44.0
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 9.2e-13 79.0 44 86.4
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.6e-12 76.6 49 69.4
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 1.7e-11 74.7 42 83.3
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 2.3e-11 74.3 75 49.3
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 1.4e-08 65.1 84 46.4
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.5e-07 61.6 36 86.1
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 5.8e-07 59.7 38 73.7
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 2.2e-06 57.8 38 73.7


User provided reference genes

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