Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 0.0e+00 1877.1 1042 100.0
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 0.0e+00 1209.1 1054 66.4
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 0.0e+00 1178.3 1048 65.6
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 2.0e-296 1022.7 1049 56.9
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 1.2e-293 1013.4 936 60.3
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 7.3e-291 1004.2 1080 55.3
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.6e-290 1001.9 1082 55.6
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.8e-289 999.6 1055 56.6
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.9e-287 992.3 1085 54.7
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.6e-277 958.4 1106 52.8
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.2e-271 939.5 1049 54.3
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 4.6e-192 676.0 1172 40.2
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 1.9e-190 670.6 1085 42.0
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.1e-174 618.2 976 42.2
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.4e-164 584.7 1081 38.2
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 9.3e-161 572.0 1056 41.0
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.9e-154 549.7 1082 39.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.2e-152 545.0 1054 40.0
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 3.3e-150 537.0 1073 39.7
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 2.8e-149 533.9 1119 37.3
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 6.2e-149 532.7 1083 38.8
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 5.3e-148 529.6 1089 37.4
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 7.6e-147 525.8 1084 39.0
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.1e-145 521.9 1078 39.0
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 9.3e-145 518.8 1072 37.1
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 6.0e-144 516.2 1056 38.9
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.9e-144 515.8 1059 40.2
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.3e-143 514.2 1088 36.8
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.3e-143 514.2 1078 36.9
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 4.1e-140 503.4 1065 35.7
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.5e-139 501.5 1080 36.9
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 5.9e-139 499.6 1065 41.7
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 5.9e-139 499.6 1106 37.2
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 1.7e-138 498.0 1097 36.1
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 1.7e-138 498.0 558 51.6
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.9e-138 497.3 1077 37.0
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 5.3e-132 476.5 608 47.4
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 1.2e-128 465.3 616 45.8
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 7.4e-126 456.1 1102 34.6
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 3.2e-121 440.7 1091 39.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 3.0e-119 434.1 1092 32.8
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 1.1e-118 432.2 790 37.6
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.7e-117 428.3 1101 32.2
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.2e-115 422.2 807 36.9
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 3.5e-115 420.6 1103 32.1
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 5.5e-113 413.3 779 37.1
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 7.2e-113 412.9 1088 35.7
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 1.0e-111 409.1 1006 33.6
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.8e-111 408.3 1087 31.3
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 5.2e-111 406.8 1121 32.1
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 9.7e-110 402.5 1126 33.5
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 3.7e-109 400.6 1174 33.9
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 1.1e-108 399.1 1117 31.4
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.4e-108 398.7 1123 31.0
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 1.8e-108 398.3 1128 31.9
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 5.3e-108 396.7 1109 31.6
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 1.6e-107 395.2 1127 32.0
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 1.6e-104 385.2 1094 30.6
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.5e-102 378.6 1100 30.5
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 5.7e-102 376.7 1089 30.5
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 7.5e-102 376.3 632 38.8
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 3.1e-100 370.9 627 40.0
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 7.0e-100 369.8 1052 32.3
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 2.7e-99 367.9 1078 31.2
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 5.9e-99 366.7 1079 31.7
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.7e-98 365.2 596 38.8
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 6.1e-96 356.7 609 39.6
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 6.1e-96 356.7 743 35.3
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.0e-95 355.9 1067 33.2
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.1e-92 345.9 736 33.0
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 7.0e-92 343.2 1081 30.5
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 4.3e-89 334.0 586 37.4
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 1.6e-88 332.0 680 35.1
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 3.6e-88 330.9 1094 29.3
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 8.0e-88 329.7 672 35.9
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 8.0e-88 329.7 1089 29.3
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 5.2e-87 327.0 715 34.8
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 3.4e-86 324.3 1098 28.7
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 6.4e-85 320.1 691 35.2
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 1.9e-84 318.5 735 34.0
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.0e-83 315.1 662 35.8
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 7.8e-83 313.2 512 40.6
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 1.0e-82 312.8 1065 29.1
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 1.9e-81 308.5 821 32.4
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.9e-81 308.5 607 35.3
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 4.3e-81 307.4 1049 29.5
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 1.2e-80 305.8 1098 29.1
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 3.6e-80 304.3 1082 29.9
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 4.7e-80 303.9 1059 27.9
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 6.2e-80 303.5 746 32.8
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 1.4e-79 302.4 832 31.9
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.3e-77 295.8 868 32.0
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.4e-76 292.4 367 44.7
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 2.7e-75 288.1 1070 27.6
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 4.6e-75 287.3 367 44.1
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 6.0e-75 287.0 739 30.9
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.2e-69 268.5 843 31.3
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 7.6e-62 243.4 371 38.5
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 3.2e-60 238.0 390 37.4
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 7.1e-60 236.9 182 57.7
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 7.8e-51 206.8 780 30.6
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 1.4e-47 196.1 179 52.0
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 2.2e-45 188.7 514 28.4
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 5.1e-42 177.6 490 27.8
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 6.2e-40 170.6 289 37.7
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 8.1e-40 170.2 221 48.0
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.5e-36 158.7 385 29.6
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 3.2e-36 158.3 373 30.3
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 9.3e-36 156.8 289 41.2
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 1.1e-31 143.3 240 32.5
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 2.4e-31 142.1 810 35.9
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.2e-30 139.8 337 30.0
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.7e-26 124.0 276 36.2
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.8e-23 115.9 89 58.4
FvH4_3g29010 Fragaria vesca HOM05D006048 ORTHO05D035641 1.2e-22 113.2 251 36.7
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.3e-13 83.2 120 42.5
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 8.5e-13 80.5 188 27.7
CiPaw.08G165600 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.5e-12 79.0 569 25.1
Atru.chr2.430 Acer truncatum HOM05D006048 ORTHO05D007642 3.0e-10 72.0 119 39.5
CDE05G3494 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 9.7e-09 67.0 186 31.2
FAN18G2849 Fragaria x ananassa HOM05D006048 ORTHO05D007642 3.7e-08 65.1 59 62.7
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 6.3e-08 64.3 96 44.8
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 2.4e-07 62.4 195 30.3
Lj9A29G6 Lonicera japonica HOM05D006048 ORTHO05D007642 4.5e-06 58.2 81 44.4


User provided reference genes

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