Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 4.6e-197 691.0 350 100.0
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 4.8e-162 574.7 351 84.9
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 4.1e-161 571.6 351 83.5
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 4.4e-155 551.6 350 81.1
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.4e-155 551.6 349 81.1
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.8e-154 548.9 349 81.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.7e-154 548.5 350 81.4
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.3e-153 544.7 357 79.6
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.5e-152 542.0 357 79.3
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.2e-150 535.4 369 76.2
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.6e-144 516.5 354 76.6
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 7.7e-144 514.2 351 77.2
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.3e-143 513.5 354 76.6
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 8.5e-143 510.8 352 74.7
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.7e-141 505.8 350 74.3
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 2.7e-141 505.8 350 74.3
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 4.0e-140 501.9 351 74.4
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 4.0e-140 501.9 354 74.6
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 6.8e-140 501.1 352 74.7
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.4e-139 498.4 355 75.2
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.8e-138 495.7 352 76.1
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 1.8e-137 493.0 351 74.6
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 3.1e-137 492.3 351 74.4
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 7.0e-137 491.1 355 73.8
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 7.0e-137 491.1 361 73.1
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 1.6e-136 490.0 352 73.9
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.0e-136 489.6 301 80.4
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 9.5e-134 480.7 350 73.1
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 6.1e-133 478.0 360 71.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 3.0e-132 475.7 355 72.7
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 3.0e-132 475.7 352 71.9
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 5.2e-132 474.9 354 73.4
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 1.2e-131 473.8 336 72.6
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.3e-130 470.3 330 73.6
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.1e-129 467.2 353 72.2
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 3.1e-129 465.7 351 72.1
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 5.4e-129 464.9 355 69.0
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 7.0e-129 464.5 356 70.8
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 2.7e-128 462.6 351 71.5
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 7.8e-128 461.1 324 73.1
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 2.3e-127 459.5 354 69.5
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 2.9e-127 459.1 312 75.3
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 3.8e-127 458.8 329 72.0
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 3.8e-127 458.8 335 71.0
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 6.6e-127 458.0 348 69.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 8.6e-127 457.6 351 70.4
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.1e-126 457.2 352 71.3
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.5e-126 456.1 353 72.0
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 3.3e-126 455.7 335 70.1
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 7.3e-126 454.5 352 68.2
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 7.3e-126 454.5 352 68.2
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.2e-125 453.8 346 71.7
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 2.1e-125 453.0 352 68.5
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 2.1e-125 453.0 349 70.2
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.1e-125 453.0 345 70.4
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 1.0e-124 450.7 347 68.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 1.0e-124 450.7 347 68.3
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.0e-124 450.7 350 67.7
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.8e-124 449.9 350 69.7
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.3e-124 449.5 386 64.0
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.3e-124 449.5 357 68.6
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 2.3e-124 449.5 354 69.2
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 5.2e-124 448.4 300 73.0
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 1.5e-123 446.8 364 69.5
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 2.0e-123 446.4 347 67.7
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 2.6e-123 446.0 290 77.2
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 3.4e-123 445.7 453 56.5
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 9.8e-123 444.1 349 67.3
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.7e-122 443.4 343 69.4
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.2e-122 443.0 348 68.1
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 2.0e-120 436.4 348 67.2
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 2.0e-120 436.4 297 75.4
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 6.0e-120 434.9 339 67.8
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.7e-119 433.3 343 68.5
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.7e-119 433.3 327 68.8
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 8.6e-119 431.0 338 68.3
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.5e-118 430.3 348 67.2
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 9.5e-118 427.6 328 68.9
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 1.2e-117 427.2 258 81.0
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 1.6e-117 426.8 255 82.7
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 6.2e-117 424.9 352 66.5
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.8e-116 423.3 323 69.0
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 4.0e-116 422.2 296 72.6
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 7.5e-115 417.9 316 71.5
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 1.7e-114 416.8 333 67.3
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 8.3e-114 414.5 361 65.7
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 5.4e-113 411.8 292 70.5
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 2.7e-112 409.5 355 64.2
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 4.6e-112 408.7 274 74.8
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 7.3e-110 401.4 302 70.9
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.4e-108 397.1 229 83.4
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 1.4e-108 397.1 351 64.7
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 3.6e-93 345.9 322 60.9
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 5.3e-92 342.0 296 57.1
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.0e-87 327.8 355 54.6
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 2.6e-83 313.2 255 63.1
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 3.2e-81 306.2 300 53.0
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.3e-79 300.8 355 47.9
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.5e-78 296.6 173 82.7
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 7.4e-78 295.0 163 87.1
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 6.7e-71 271.9 359 44.6
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.5e-70 270.0 187 69.5
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.3e-66 257.7 144 84.0
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.0e-58 231.5 224 49.1
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.0e-55 221.5 132 84.8
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 4.3e-54 216.1 126 83.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 4.3e-54 216.1 126 83.3
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 5.3e-52 209.1 171 65.5
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.1e-49 201.4 132 74.2
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 2.2e-42 177.2 325 33.8
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 4.4e-38 162.9 331 34.1
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 4.1e-36 156.4 159 60.4
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 7.2e-33 145.6 247 36.0
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 1.2e-32 144.8 107 72.9
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 1.6e-24 117.9 201 41.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 8.0e-24 115.5 83 67.5
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 4.4e-22 109.8 93 62.4
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 6.3e-21 105.9 53 88.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 1.5e-14 84.7 55 70.9
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 5.7e-14 82.8 129 41.1
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.4e-12 78.2 129 39.5
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 1.6e-11 74.7 148 40.5
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 6.6e-10 69.3 38 84.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.2e-08 65.1 39 76.9
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.2e-08 65.1 39 76.9
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 1.2e-06 58.5 198 28.3
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 1.2e-06 58.5 255 24.7
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 3.4e-06 57.0 252 25.0
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 4.4e-06 56.6 210 28.1
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 5.8e-06 56.2 171 28.7
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 5.8e-06 56.2 252 25.0
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 7.5e-06 55.8 264 26.5


User provided reference genes

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