Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 6.1e-248 860.5 485 100.0
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 2.1e-200 702.6 441 83.7
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 2.2e-197 692.6 486 79.6
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 5.8e-174 614.8 442 72.6
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.0e-170 602.4 410 72.4
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 3.9e-170 602.1 454 71.6
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.2e-166 590.5 458 72.5
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 1.6e-163 580.1 496 64.7
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.6e-163 580.1 393 72.8
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.6e-163 578.6 390 72.3
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.8e-159 566.6 497 63.4
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 4.9e-157 558.5 449 66.4
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 7.1e-156 554.7 422 69.7
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.9e-153 546.6 491 62.7
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 3.1e-151 539.3 491 63.3
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.2e-149 533.1 484 61.0
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.4e-148 530.4 426 66.0
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 4.2e-148 528.9 429 64.6
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 9.3e-148 527.7 423 64.5
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.2e-147 527.3 426 64.3
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.0e-146 522.7 446 61.4
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 5.7e-145 518.5 484 58.7
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 7.4e-145 518.1 440 60.0
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 4.8e-144 515.4 435 60.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 6.9e-143 511.5 501 62.5
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.2e-142 510.8 426 63.1
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.5e-142 510.4 492 61.8
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 5.9e-142 508.4 423 63.1
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 1.3e-141 507.3 459 61.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.7e-141 506.9 427 62.5
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.7e-141 506.9 498 55.6
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 2.9e-141 506.1 357 69.7
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 2.9e-141 506.1 493 57.8
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 3.8e-141 505.8 450 62.2
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 9.4e-140 501.1 487 59.3
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.2e-139 500.7 434 60.8
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 6.1e-139 498.4 425 62.1
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 6.1e-139 498.4 394 64.7
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 3.3e-137 492.7 381 64.3
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 4.4e-137 492.3 494 56.3
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 5.7e-137 491.9 496 55.8
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 7.4e-137 491.5 430 60.5
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.3e-136 490.7 445 57.5
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 6.9e-135 485.0 429 58.7
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.5e-134 483.8 492 56.1
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.1e-132 477.6 432 60.4
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 3.2e-132 476.1 442 54.1
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 7.2e-132 474.9 488 57.0
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.2e-131 474.2 430 56.3
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 6.1e-131 471.9 483 55.5
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.4e-130 470.7 487 51.7
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.8e-130 470.3 431 56.4
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 1.8e-130 470.3 431 56.4
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 5.2e-130 468.8 429 56.6
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 6.7e-130 468.4 421 59.4
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 6.7e-130 468.4 487 51.7
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 2.0e-129 466.8 487 51.7
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 2.0e-129 466.8 487 51.3
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 2.0e-129 466.8 487 51.3
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.7e-128 462.6 481 53.4
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 4.8e-128 462.2 422 56.2
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 2.4e-127 459.9 485 55.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 3.1e-127 459.5 418 59.8
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 4.1e-127 459.1 424 56.8
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 5.3e-127 458.8 492 51.4
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 3.5e-126 456.1 345 65.5
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.2e-125 453.4 441 54.4
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 6.5e-125 451.8 498 54.2
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 8.5e-125 451.4 441 55.3
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.2e-123 447.6 442 53.2
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.7e-123 446.4 364 59.9
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 5.2e-122 442.2 437 54.9
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 8.8e-122 441.4 428 55.1
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 8.2e-120 434.9 405 53.3
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 2.0e-118 430.3 460 53.9
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 3.5e-118 429.5 442 55.0
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 3.5e-118 429.5 351 64.1
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 3.2e-116 422.9 465 52.5
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 5.5e-116 422.2 350 58.6
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 5.5e-116 422.2 350 58.6
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 1.2e-115 421.0 449 49.2
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 4.7e-115 419.1 432 52.1
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 6.1e-115 418.7 346 60.1
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 8.0e-115 418.3 349 62.2
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 6.3e-112 408.7 421 51.5
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 3.1e-111 406.4 410 55.6
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 5.9e-110 402.1 342 59.6
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.0e-109 401.4 343 62.1
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.0e-109 401.4 344 58.4
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.1e-108 397.9 398 51.5
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 8.3e-104 381.7 330 56.7
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 3.5e-102 376.3 430 45.8
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 3.2e-87 326.6 336 52.7
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 2.3e-85 320.5 318 56.9
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.6e-78 296.2 274 52.9
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.8e-66 257.7 425 37.6
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 6.6e-61 239.2 201 59.7
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 9.9e-57 225.3 319 42.9
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 9.9e-57 225.3 453 31.3
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 8.4e-56 222.2 347 38.3
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.9e-55 221.1 369 37.4
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 6.9e-50 202.6 295 43.4
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 9.9e-49 198.7 198 54.5
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 4.6e-46 189.9 488 33.0
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 5.6e-44 183.0 386 34.5
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 4.5e-33 146.7 203 40.9
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 2.9e-32 144.1 170 48.8
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.6e-30 136.7 173 50.9
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.0e-29 134.0 169 46.2
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.1e-12 79.0 57 64.9
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.3e-12 77.4 80 68.8
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 4.8e-11 73.6 108 45.4
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 2.4e-10 71.2 88 58.0
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 4.1e-10 70.5 78 64.1
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 5.3e-10 70.1 88 56.8
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 7.7e-09 66.2 85 62.4
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.9e-07 61.6 89 55.1
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 3.6e-06 57.4 52 55.8


User provided reference genes

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