Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 3.1e-167 591.7 289 100.0
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 6.2e-139 497.7 289 84.4
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 8.6e-133 477.2 287 81.2
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.6e-132 474.6 289 80.3
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 4.7e-131 471.5 287 80.1
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.8e-123 445.7 278 78.8
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 2.4e-119 432.6 278 77.0
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 2.8e-115 419.1 284 71.8
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 4.5e-113 411.8 282 70.9
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 9.9e-113 410.6 284 71.5
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 3.8e-112 408.7 282 70.9
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 1.4e-111 406.8 284 70.1
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.2e-110 403.7 289 66.4
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.6e-110 403.3 290 68.3
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 6.7e-109 397.9 290 67.6
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.5e-108 396.0 284 69.0
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 3.3e-108 395.6 284 68.3
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.3e-107 393.7 284 68.3
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.1e-107 392.9 284 68.3
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.1e-107 392.9 284 68.3
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 3.7e-107 392.1 283 66.8
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 4.8e-107 391.7 285 68.1
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 4.8e-107 391.7 281 68.3
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 6.2e-107 391.3 287 67.2
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.1e-106 390.6 272 68.8
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 1.4e-106 390.2 285 66.7
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 1.8e-106 389.8 280 68.6
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.8e-106 389.8 284 68.0
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.0e-106 388.7 282 68.4
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 1.5e-105 386.7 285 66.7
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.7e-104 383.3 284 66.5
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.9e-104 382.5 282 66.7
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 1.9e-103 379.8 284 65.1
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.9e-103 379.8 282 65.2
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 5.5e-103 378.3 287 63.1
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 4.6e-102 375.2 282 65.2
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 6.0e-102 374.8 294 61.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 6.0e-102 374.8 290 63.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 1.0e-101 374.0 291 63.9
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.3e-101 372.9 283 65.7
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 3.9e-101 372.1 277 64.3
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 5.1e-101 371.7 286 66.1
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 6.7e-101 371.3 284 62.7
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.1e-100 370.5 284 64.1
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.1e-100 370.5 300 62.7
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 2.5e-100 369.4 241 71.8
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 5.6e-100 368.2 281 62.6
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 7.4e-100 367.9 277 65.7
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 9.6e-100 367.5 284 62.7
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 1.6e-99 366.7 283 62.2
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.6e-99 366.7 271 66.8
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 2.1e-99 366.3 291 61.2
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 2.8e-99 365.9 283 61.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 3.7e-99 365.5 290 62.1
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 4.8e-99 365.2 285 64.6
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 4.8e-99 365.2 291 61.5
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 8.2e-99 364.4 288 62.2
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 2.4e-98 362.8 246 68.3
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 3.1e-98 362.5 283 64.0
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 6.9e-98 361.3 283 61.5
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 6.9e-98 361.3 274 63.9
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.5e-97 360.1 282 61.0
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.6e-97 359.4 262 63.7
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 7.6e-97 357.8 266 62.8
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 7.6e-97 357.8 276 62.7
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 1.0e-96 357.5 258 64.0
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.0e-96 357.5 288 61.8
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 3.8e-96 355.5 288 62.2
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 4.9e-96 355.1 231 72.3
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 8.4e-96 354.4 285 61.8
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.4e-95 353.6 263 66.5
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 2.5e-95 352.8 293 60.4
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.2e-94 350.5 281 62.6
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.1e-94 349.7 310 57.1
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 4.6e-94 348.6 286 61.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.0e-93 347.4 286 62.2
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 8.7e-93 344.4 318 54.7
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.1e-92 344.0 281 57.3
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 2.2e-91 339.7 281 60.1
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 3.7e-91 339.0 286 59.8
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 6.3e-91 338.2 242 65.3
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.1e-90 335.5 246 66.7
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.6e-89 332.8 275 60.4
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 1.3e-88 330.5 262 61.5
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 1.1e-87 327.4 270 57.8
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 2.3e-85 319.7 275 56.4
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 8.8e-85 317.8 260 57.7
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.0e-84 316.6 273 58.6
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 2.0e-81 306.6 238 58.4
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 1.9e-79 300.1 267 55.4
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 5.1e-77 292.0 234 61.1
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 2.2e-75 286.6 272 51.5
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 1.7e-72 276.9 258 54.7
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 3.2e-71 272.7 288 50.3
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 4.7e-70 268.9 286 49.0
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.8e-69 266.9 287 49.5
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 6.7e-69 265.0 287 48.4
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-68 263.5 287 47.0
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 9.7e-68 261.2 263 51.3
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 1.7e-67 260.4 287 48.1
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-67 260.0 285 48.8
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 2.2e-67 260.0 285 48.8
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 6.3e-67 258.5 263 50.2
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 8.2e-67 258.1 290 46.6
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.8e-66 256.9 287 48.4
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.8e-66 256.9 270 46.7
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 7.0e-66 255.0 292 49.0
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 9.1e-66 254.6 290 47.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 1.6e-65 253.8 293 48.5
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.6e-65 253.8 252 50.0
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 2.0e-65 253.4 277 49.8
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 4.5e-65 252.3 290 49.0
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 7.7e-65 251.5 269 53.2
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 7.2e-63 245.0 267 48.3
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 5.2e-61 238.8 229 48.0
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.2e-52 211.1 256 42.6
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 8.3e-51 204.9 243 43.2
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 8.6e-48 194.9 275 38.9
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 4.2e-47 192.6 240 43.8
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.7e-46 189.1 195 48.2
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.1e-39 167.9 190 44.7
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 3.6e-38 162.9 193 45.1
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.8e-37 160.6 195 44.6
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 8.9e-37 158.3 174 45.4
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-36 157.1 195 43.6
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-36 157.1 195 44.6
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-36 156.8 240 39.6
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 4.4e-36 156.0 193 44.6
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 4.4e-36 156.0 260 38.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 7.5e-36 155.2 222 45.9
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-35 154.5 226 41.6
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 5.4e-34 149.1 244 38.9
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 2.5e-31 140.2 140 50.0
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 3.6e-30 136.3 170 45.9
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 4.0e-29 132.9 140 45.7
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.6e-28 130.2 140 49.3
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-27 127.5 240 35.4
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.4e-26 123.6 208 37.5
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-24 116.7 193 37.8
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-24 116.7 193 37.8
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 5.6e-23 112.5 93 61.3
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.8e-21 107.5 169 34.9
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 5.2e-21 105.9 174 35.1
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 3.2e-18 96.7 147 42.9
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 6.6e-16 89.0 61 62.3
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 6.6e-16 89.0 61 62.3
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 1.6e-14 84.3 67 61.2
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.9e-10 70.9 99 42.4


User provided reference genes

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