Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 8.8e-99 363.6 182 100.0
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 9.1e-96 353.6 182 96.7
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.5e-95 352.8 182 95.6
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.0e-95 352.4 182 95.6
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 94.0
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 92.9
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 7.9e-92 340.5 182 92.3
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 93.4
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 92.3
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 92.3
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 92.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 91.8
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 91.8
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 91.8
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.1e-90 336.7 182 91.2
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 91.8
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.5e-90 336.3 177 93.8
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 91.8
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 90.7
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 90.7
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 2.0e-90 335.9 180 92.2
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 2.6e-90 335.5 180 90.6
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 89.6
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 90.1
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 90.7
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 90.1
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 90.7
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 89.6
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 90.7
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.3e-89 333.2 176 93.8
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 2.2e-89 332.4 182 89.6
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 89.6
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 90.1
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 89.6
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 89.6
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 3.7e-89 331.6 182 91.2
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 3.7e-89 331.6 182 91.2
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 6.3e-89 330.9 178 91.6
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 6.3e-89 330.9 182 89.6
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 6.3e-89 330.9 182 89.6
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 6.3e-89 330.9 182 87.9
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 6.3e-89 330.9 182 88.5
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 8.2e-89 330.5 182 89.0
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.4e-88 329.7 182 89.0
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 1.4e-88 329.7 181 89.5
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 1.4e-88 329.7 182 89.6
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 2.4e-88 328.9 176 91.5
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 4.1e-88 328.2 176 92.0
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 4.1e-88 328.2 179 90.5
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 5.3e-88 327.8 182 87.9
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 5.3e-88 327.8 182 88.5
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 5.3e-88 327.8 182 87.9
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 9.1e-88 327.0 181 87.3
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 9.1e-88 327.0 182 87.9
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 1.2e-87 326.6 178 90.4
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.0e-87 325.9 182 87.4
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 2.0e-87 325.9 179 88.8
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.5e-87 325.1 182 87.4
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 4.5e-87 324.7 179 88.8
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 5.9e-87 324.3 202 82.2
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 5.9e-87 324.3 182 87.4
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 7.7e-87 323.9 182 89.0
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.0e-86 323.6 172 94.2
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.3e-86 323.2 176 91.5
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.2e-86 322.4 173 91.9
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 3.8e-86 321.6 172 91.9
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 3.8e-86 321.6 208 80.8
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 86.3
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 1.5e-85 319.7 176 88.6
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.5e-85 319.7 173 90.8
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.5e-85 319.7 182 87.9
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 3.2e-85 318.5 197 82.2
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 4.2e-85 318.2 194 83.0
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 1.6e-84 316.2 182 84.6
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 2.7e-84 315.5 182 85.2
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.6e-84 315.1 178 86.0
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 4.7e-84 314.7 182 84.6
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 6.1e-84 314.3 182 85.2
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 6.1e-84 314.3 182 85.2
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 8.0e-84 313.9 182 84.6
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.3e-83 312.4 182 84.6
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 5.2e-83 311.2 182 84.1
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 6.7e-83 310.8 178 86.0
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.6e-82 308.9 182 83.5
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 5.7e-82 307.8 178 87.6
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 1.3e-81 306.6 177 84.7
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 2.0e-79 299.3 174 83.9
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 2.0e-79 299.3 174 83.9
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 2.7e-79 298.9 182 82.4
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 2.7e-79 298.9 174 83.9
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 3.5e-79 298.5 174 83.3
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.5e-79 298.1 173 83.8
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 4.5e-79 298.1 182 82.4
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 5.9e-79 297.7 174 83.3
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.5e-77 292.4 182 83.5
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 8.0e-76 287.3 177 81.9
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.5e-74 283.1 182 77.5
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.6e-74 282.3 155 91.6
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 6.3e-73 277.7 152 86.8
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 8.3e-73 277.3 183 77.6
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.4e-72 276.6 155 87.1
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.8e-72 276.2 151 91.4
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 4.1e-72 275.0 149 87.9
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.0e-70 270.4 155 85.2
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 8.0e-68 260.8 155 83.9
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 3.0e-67 258.8 184 77.2
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 4.9e-65 251.5 181 74.0
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.2e-63 246.9 139 84.2
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.6e-63 246.5 130 91.5
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 2.7e-63 245.7 128 92.2
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 5.7e-58 228.0 125 85.6
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.7e-57 226.5 184 60.3
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 3.5e-55 218.8 177 57.6
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.3e-54 216.9 155 72.9
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 2.8e-52 209.1 185 56.2
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.3e-49 200.3 105 92.4
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.7e-49 199.9 105 92.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.2e-49 199.5 105 92.4
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.2e-47 193.7 105 88.6
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.3e-45 185.7 101 86.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.1e-43 180.6 177 60.5
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 6.8e-43 177.9 154 64.3
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 9.8e-42 174.1 100 85.0
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.7e-39 166.0 92 89.1
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.0e-38 164.1 86 91.9
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 5.1e-38 161.8 92 84.8
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.9e-37 159.8 91 79.1
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.8e-33 145.6 127 57.5
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 1.0e-30 137.5 87 78.2
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.0e-30 137.5 92 78.3
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 2.1e-28 129.8 66 93.9
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 2.4e-24 116.3 77 79.2
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.4e-24 115.2 70 84.3
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 4.9e-17 92.0 48 87.5
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 5.4e-16 88.6 182 32.4
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 4.6e-15 85.5 182 31.3
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 3.9e-14 82.4 182 31.9
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 6.7e-14 81.6 182 31.9
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 8.7e-14 81.3 182 30.8
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.5e-13 80.5 182 30.2
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 2.5e-13 79.7 182 31.3
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.3e-13 79.0 184 29.3
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 4.3e-13 79.0 183 28.4
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 7.4e-13 78.2 182 30.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 9.6e-13 77.8 182 29.1
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 9.6e-13 77.8 182 29.7
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.3e-12 77.4 181 30.4
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.6e-12 77.0 49 77.6
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.1e-12 76.6 182 30.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 2.8e-12 76.3 181 29.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.6e-12 75.9 181 30.4
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 4.8e-12 75.5 182 29.7
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 4.8e-12 75.5 182 29.1
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 8.1e-12 74.7 181 29.3
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 28.6
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.4e-11 73.9 52 63.5
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.4e-11 73.2 182 28.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.4e-11 73.2 182 29.7
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 2.4e-11 73.2 182 29.7
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.1e-11 72.8 182 29.1
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 5.3e-11 72.0 182 28.6
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.9e-11 71.6 159 30.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 9.0e-11 71.2 181 27.6
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.5e-10 70.5 182 28.6
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.2e-09 66.6 198 25.3
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 6.4e-09 65.1 137 30.7
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 8.4e-09 64.7 180 30.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.3e-06 57.4 133 29.3


User provided reference genes

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