Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G316300 Prunus persica HOM05D003471 ORTHO05D004079 1.3e-32 142.5 73 100.0
Prupe.3G137800 Prunus persica HOM05D003471 ORTHO05D004079 1.8e-23 112.1 68 88.2
MD09G1247500 Malus domestica HOM05D003471 ORTHO05D004079 2.9e-21 104.8 68 82.4
MD17G1240400 Malus domestica HOM05D003471 ORTHO05D004079 6.8e-18 93.6 68 75.0
FvH4_6g26191 Fragaria vesca HOM05D003471 ORTHO05D004079 2.6e-17 91.7 60 78.3
FAN02G0849 Fragaria x ananassa HOM05D003471 ORTHO05D004079 2.6e-17 91.7 60 78.3
FAN05G5282 Fragaria x ananassa HOM05D003471 ORTHO05D004079 2.6e-17 91.7 60 78.3
FAN09G2249 Fragaria x ananassa HOM05D003471 ORTHO05D004079 2.6e-17 91.7 60 78.3
RcHm_v2.0_Chr2g0126471 Rosa chinensis HOM05D003471 ORTHO05D004079 3.4e-17 91.3 68 72.1
arahy.Tifrunner.gnm1.ann1.07PP75 Arachis hypogaea HOM05D003471 ORTHO05D004079 2.8e-16 88.2 65 70.8
arahy.Tifrunner.gnm1.ann1.M8XF3U Arachis hypogaea HOM05D003471 ORTHO05D004079 2.8e-16 88.2 65 70.8
Ca_20058_v3 Cicer arietinum L. HOM05D003471 ORTHO05D004079 1.8e-15 85.5 64 67.2
Psat7g157560 Pisum sativum HOM05D003471 ORTHO05D004079 1.8e-15 85.5 59 72.9
Lalb_Chr01g0005221 Lupinus albus HOM05D003471 ORTHO05D004079 2.4e-15 85.1 67 67.2
TWI36G1500 Tripterygium wilfordii HOM05D003471 ORTHO05D004079 2.4e-15 85.1 68 67.6
VMungo1127G1228 Vigna mungo HOM05D003471 ORTHO05D004079 2.4e-15 85.1 66 68.2
Dinv26416 Davidia involucrata HOM05D003471 ORTHO05D004079 3.2e-15 84.7 63 68.3
Medtr0004s0130 Medicago truncatula HOM05D003471 ORTHO05D004079 3.2e-15 84.7 67 68.7
Lalb_Chr03g0029461 Lupinus albus HOM05D003471 ORTHO05D004079 4.1e-15 84.3 67 65.7
Phvul.011G113900 Phaseolus vulgaris HOM05D003471 ORTHO05D004079 4.1e-15 84.3 66 68.2
Cpa.g.sc34.163 Carica papaya HOM05D003471 ORTHO05D004079 7.0e-15 83.6 63 66.7
Lalb_Chr19g0135271 Lupinus albus HOM05D003471 ORTHO05D004079 7.0e-15 83.6 67 65.7
Potri.013G131600 Populus trichocarpa HOM05D003471 ORTHO05D004079 7.0e-15 83.6 68 64.7
TWI75G0143 Tripterygium wilfordii HOM05D003471 ORTHO05D004079 7.0e-15 83.6 68 66.2
Aa31LG2G22160 Aethionema arabicum HOM05D003471 ORTHO05D004079 1.2e-14 82.8 63 66.7
DCAR_013008 Daucus carota HOM05D003471 ORTHO05D004079 2.0e-14 82.0 68 63.2
Hma1.2p1_1145F.1_g261390 Hydrangea macrophylla HOM05D003471 ORTHO05D004079 2.0e-14 82.0 60 68.3
Hma1.2p1_1937F.1_g308290 Hydrangea macrophylla HOM05D003471 ORTHO05D004079 2.0e-14 82.0 60 68.3
Atru.chr6.2995 Acer truncatum HOM05D003471 ORTHO05D004079 2.7e-14 81.6 63 65.1
arahy.Tifrunner.gnm1.ann1.T4SHUS Arachis hypogaea HOM05D003471 ORTHO05D004079 2.7e-14 81.6 60 71.7
CiPaw.04G125900 Carya illinoinensis HOM05D003471 ORTHO05D004079 2.7e-14 81.6 68 67.6
Nitab4.5_0000512g0030 Nicotiana tabacum HOM05D003471 ORTHO05D004079 2.7e-14 81.6 65 66.2
Actinidia39316 Actinidia chinensis HOM05D003471 ORTHO05D004079 3.5e-14 81.3 68 61.8
Dinv23639 Davidia involucrata HOM05D003471 ORTHO05D004079 3.5e-14 81.3 68 63.2
Lj3g0013524 Lotus japonicus HOM05D003471 ORTHO05D004079 3.5e-14 81.3 60 68.3
arahy.Tifrunner.gnm1.ann1.4CC3R7 Arachis hypogaea HOM05D003471 ORTHO05D004079 4.6e-14 80.9 67 64.2
CSS0029588 Camellia sinensis var. sinensis HOM05D003471 ORTHO05D004079 4.6e-14 80.9 68 63.2
Cfa014615 Carpinus fangiana HOM05D003471 ORTHO05D004079 4.6e-14 80.9 68 69.1
Hma1.2p1_0002F.1_g001880 Hydrangea macrophylla HOM05D003471 ORTHO05D004079 4.6e-14 80.9 63 65.1
Manes.12G089408 Manihot esculenta HOM05D003471 ORTHO05D004079 4.6e-14 80.9 68 63.2
CiPaw.03G177100 Carya illinoinensis HOM05D003471 ORTHO05D004079 5.9e-14 80.5 68 67.6
CAN.G578.3 Capsicum annuum HOM05D003471 ORTHO05D004079 7.8e-14 80.1 67 65.7
Eucgr.K01026 Eucalyptus grandis HOM05D003471 ORTHO05D004079 7.8e-14 80.1 65 64.6
Nitab4.5_0000585g0140 Nicotiana tabacum HOM05D003471 ORTHO05D004079 7.8e-14 80.1 67 65.7
TPR.G9833 Trifolium pratense HOM05D003471 ORTHO05D004079 7.8e-14 80.1 67 61.2
Sabra13G0111100 Salix brachista HOM05D003471 ORTHO05D004079 1.3e-13 79.3 63 60.3
Cc05_g07150 Coffea canephora HOM05D003471 ORTHO05D004079 1.7e-13 79.0 61 67.2
Peaxi162Scf00059g01919 Petunia axillaris HOM05D003471 ORTHO05D004079 1.7e-13 79.0 66 66.7
CARHR236010 Cardamine hirsuta HOM05D003471 ORTHO05D004079 2.3e-13 78.6 63 60.3
Thhalv10024987m.g Eutrema salsugineum HOM05D003471 ORTHO05D004079 2.3e-13 78.6 60 63.3
Sp7g26260 Schrenkiella parvula HOM05D003471 ORTHO05D004079 2.3e-13 78.6 63 60.3
THA.LOC104814505 Tarenaya hassleriana HOM05D003471 ORTHO05D004079 2.3e-13 78.6 65 61.5
vmacro09283 Vaccinium macrocarpon HOM05D003471 ORTHO05D004079 2.3e-13 78.6 68 58.8
Actinidia11034 Actinidia chinensis HOM05D003471 ORTHO05D004079 2.9e-13 78.2 68 60.3
A03p58000 Brassica napus HOM05D003471 ORTHO05D004079 2.9e-13 78.2 66 62.1
BraA03t14863Z Brassica rapa HOM05D003471 ORTHO05D004079 2.9e-13 78.2 66 62.1
Nitab4.5_0009473g0010 Nicotiana tabacum HOM05D003471 ORTHO05D004079 2.9e-13 78.2 67 62.7
Rhsim04G0068400 Rhododendron simsii HOM05D003471 ORTHO05D004079 2.9e-13 78.2 58 65.5
C07p56120 Brassica napus HOM05D003471 ORTHO05D004079 3.9e-13 77.8 60 63.3
BolC7t46087H Brassica oleracea HOM05D003471 ORTHO05D004079 3.9e-13 77.8 60 63.3
CAN.G248.8 Capsicum annuum HOM05D003471 ORTHO05D004079 3.9e-13 77.8 69 62.3
Peaxi162Scf00132g00112 Petunia axillaris HOM05D003471 ORTHO05D004079 3.9e-13 77.8 68 63.2
BcaNung01578 Brassica carinata HOM05D003471 ORTHO05D004079 5.0e-13 77.4 60 63.3
Potri.019G095400 Populus trichocarpa HOM05D003471 ORTHO05D004079 5.0e-13 77.4 70 58.6
Solyc07g053990.4 Solanum lycopersicum HOM05D003471 ORTHO05D004079 5.0e-13 77.4 61 65.6
PGSC0003DMG400018344 Solanum tuberosum HOM05D003471 ORTHO05D004079 5.0e-13 77.4 61 65.6
C01p24780 Brassica napus HOM05D003471 ORTHO05D004079 8.6e-13 76.6 60 61.7
BolC1t02425H Brassica oleracea HOM05D003471 ORTHO05D004079 8.6e-13 76.6 60 61.7
Sc12g0003080 Simmondsia chinensis HOM05D003471 ORTHO05D004079 8.6e-13 76.6 69 62.3
Solyc10g008340.4 Solanum lycopersicum HOM05D003471 ORTHO05D004079 8.6e-13 76.6 64 62.5
AL7G24300 Arabidopsis lyrata HOM05D003471 ORTHO05D004079 1.1e-12 76.3 63 58.7
BcaB01g02220 Brassica carinata HOM05D003471 ORTHO05D004079 1.1e-12 76.3 63 58.7
BcaNung01581 Brassica carinata HOM05D003471 ORTHO05D004079 1.1e-12 76.3 60 61.7
Carub.0007s1245 Capsella rubella HOM05D003471 ORTHO05D004079 1.1e-12 76.3 60 61.7
Gohir.A04G103700 Gossypium hirsutum HOM05D003471 ORTHO05D004079 1.1e-12 76.3 63 65.1
Gohir.D04G143400 Gossypium hirsutum HOM05D003471 ORTHO05D004079 1.1e-12 76.3 63 65.1
QL08p038723 Quercus lobata HOM05D003471 ORTHO05D004079 1.1e-12 76.3 60 70.0
Sabra19G0107700 Salix brachista HOM05D003471 ORTHO05D004079 1.1e-12 76.3 65 58.5
BcaC06g32629 Brassica carinata HOM05D003471 ORTHO05D004079 1.5e-12 75.9 63 57.1
Sopen10g004200 Solanum pennellii HOM05D003471 ORTHO05D004079 1.5e-12 75.9 61 63.9
PGSC0003DMG400013142 Solanum tuberosum HOM05D003471 ORTHO05D004079 1.5e-12 75.9 61 63.9
TWI18G1388 Tripterygium wilfordii HOM05D003471 ORTHO05D004079 1.5e-12 75.9 68 61.8
Gorai.012G128800 Gossypium raimondii HOM05D003471 ORTHO05D004079 1.9e-12 75.5 63 63.5
Glyma.12G113200 Glycine max HOM05D003471 ORTHO05D004079 2.5e-12 75.1 66 65.2
Haze_13161 Corylus avellana HOM05D003471 ORTHO05D004079 3.3e-12 74.7 55 74.5
PGR142G4061 Punica granatum HOM05D003471 ORTHO05D004079 3.3e-12 74.7 63 61.9
Lj8A112T23 Lonicera japonica HOM05D003471 ORTHO05D004079 4.3e-12 74.3 61 63.9
Thecc.02G179600 Theobroma cacao HOM05D003471 ORTHO05D004079 4.3e-12 74.3 68 64.7
AT4G28300 Arabidopsis thaliana HOM05D003471 ORTHO05D004079 5.6e-12 73.9 63 55.6
CANSAT78G0723 Cannabis sativa HOM05D003471 ORTHO05D004079 5.6e-12 73.9 63 60.3
ClCG07G002900 Citrullus lanatus HOM05D003471 ORTHO05D004079 5.6e-12 73.9 63 60.3
COL.COLO4_30185 Corchorus olitorius HOM05D003471 ORTHO05D004079 5.6e-12 73.9 63 66.7
Duzib248G1053 Durio zibethinus HOM05D003471 ORTHO05D004079 5.6e-12 73.9 68 63.2
Gohir.A03G156700 Gossypium hirsutum HOM05D003471 ORTHO05D004079 5.6e-12 73.9 63 63.5
Gohir.D02G179900 Gossypium hirsutum HOM05D003471 ORTHO05D004079 5.6e-12 73.9 63 63.5
Gorai.005G201600 Gossypium raimondii HOM05D003471 ORTHO05D004079 5.6e-12 73.9 63 63.5
SalBow6G5870 Salvia bowleyana HOM05D003471 ORTHO05D004079 5.6e-12 73.9 65 56.9
Ah.01g015160 Amaranthus hybridus HOM05D003471 ORTHO05D004079 7.3e-12 73.6 66 57.6
Manes.13G146700 Manihot esculenta HOM05D003471 ORTHO05D004079 7.3e-12 73.6 63 57.1
Ah.01g004270 Amaranthus hybridus HOM05D003471 ORTHO05D004079 1.2e-11 72.8 69 59.4
A01p19700 Brassica napus HOM05D003471 ORTHO05D004079 1.2e-11 72.8 61 59.0
BraA01t01903Z Brassica rapa HOM05D003471 ORTHO05D004079 1.2e-11 72.8 61 59.0
Lj3g0015070 Lotus japonicus HOM05D003471 ORTHO05D004079 1.2e-11 72.8 64 57.8
A08p20140 Brassica napus HOM05D003471 ORTHO05D004079 1.6e-11 72.4 63 52.4
BolC8t48752H Brassica oleracea HOM05D003471 ORTHO05D004079 1.6e-11 72.4 63 52.4
Glyma.06G292800 Glycine max HOM05D003471 ORTHO05D004079 1.6e-11 72.4 48 77.1
arahy.Tifrunner.gnm1.ann1.NU4N3I Arachis hypogaea HOM05D003471 ORTHO05D004079 2.1e-11 72.0 48 77.1
Lj3g0026741 Lotus japonicus HOM05D003471 ORTHO05D004079 2.1e-11 72.0 67 56.7
Sc21g0002870 Simmondsia chinensis HOM05D003471 ORTHO05D004079 2.1e-11 72.0 68 55.9
CsaV3_7G004430 Cucumis sativus L. HOM05D003471 ORTHO05D004079 3.6e-11 71.2 60 61.7
Hund07928 Selenicereus undatus HOM05D003471 ORTHO05D004079 3.6e-11 71.2 68 57.4
MELO3C018736.2 Cucumis melo HOM05D003471 ORTHO05D004079 4.7e-11 70.9 63 58.7
arahy.Tifrunner.gnm1.ann1.BN612E Arachis hypogaea HOM05D003471 ORTHO05D004079 6.1e-11 70.5 48 75.0
AUR62037355 Chenopodium quinoa HOM05D003471 ORTHO05D004079 6.1e-11 70.5 69 58.0
Aa31LG8G17580 Aethionema arabicum HOM05D003471 ORTHO05D004079 8.0e-11 70.1 63 57.1
BraA08t33973Z Brassica rapa HOM05D003471 ORTHO05D004079 8.0e-11 70.1 63 50.8
BcaB03g12565 Brassica carinata HOM05D003471 ORTHO05D004079 1.0e-10 69.7 63 50.8
BcaC07g38323 Brassica carinata HOM05D003471 ORTHO05D004079 1.0e-10 69.7 64 53.1
C08p10780 Brassica napus HOM05D003471 ORTHO05D004079 1.0e-10 69.7 64 53.1
DCAR_021243 Daucus carota HOM05D003471 ORTHO05D004079 1.0e-10 69.7 60 56.7
Duzib052G1215 Durio zibethinus HOM05D003471 ORTHO05D004079 1.0e-10 69.7 68 64.7
Nitab4.5_0004071g0030 Nicotiana tabacum HOM05D003471 ORTHO05D004079 1.0e-10 69.7 54 68.5
Oeu035059.1 Olea europaea HOM05D003471 ORTHO05D004079 1.0e-10 69.7 68 58.8
CSS0028918 Camellia sinensis var. sinensis HOM05D003471 ORTHO05D004079 1.4e-10 69.3 49 73.5
Sed0014275 Sechium edule HOM05D003471 ORTHO05D004079 1.4e-10 69.3 64 56.2
GSVIVG01020546001 Vitis vinifera HOM05D003471 ORTHO05D004079 1.4e-10 69.3 68 55.9
CSS0002020 Camellia sinensis var. sinensis HOM05D003471 ORTHO05D004079 2.3e-10 68.6 53 66.0
AUR62042594 Chenopodium quinoa HOM05D003471 ORTHO05D004079 2.3e-10 68.6 60 60.0
ECA233G0926 Erigeron canadensis HOM05D003471 ORTHO05D004079 2.3e-10 68.6 64 54.7
unitig_578.g16771 Utricularia gibba HOM05D003471 ORTHO05D004079 2.3e-10 68.6 61 59.0
Lalb_Chr22g0356551 Lupinus albus HOM05D003471 ORTHO05D004079 3.1e-10 68.2 66 57.6
Phvul.005G103700 Phaseolus vulgaris HOM05D003471 ORTHO05D004079 4.0e-10 67.8 61 62.3
Sed0017020 Sechium edule HOM05D003471 ORTHO05D004079 5.2e-10 67.4 61 60.7
Sopen07g027980 Solanum pennellii HOM05D003471 ORTHO05D004079 5.2e-10 67.4 54 64.8
Glyma.12G204300 Glycine max HOM05D003471 ORTHO05D004079 6.8e-10 67.0 67 55.2
SGA_v2.0_scaffold109G31130 Striga asiatica HOM05D003471 ORTHO05D004079 6.8e-10 67.0 61 57.4
Aqoxy1G02431 Aquilegia oxysepala HOM05D003471 ORTHO05D004079 8.9e-10 66.6 60 56.7
BcaB02g09194 Brassica carinata HOM05D003471 ORTHO05D004079 8.9e-10 66.6 53 60.4
MELO3C018735.2 Cucumis melo HOM05D003471 ORTHO05D004079 8.9e-10 66.6 65 56.9
Oeu019136.1 Olea europaea HOM05D003471 ORTHO05D004079 8.9e-10 66.6 61 60.7
VMungo1080G0374 Vigna mungo HOM05D003471 ORTHO05D004079 8.9e-10 66.6 60 58.3
DCAR_009747 Daucus carota HOM05D003471 ORTHO05D004079 1.2e-09 66.2 66 53.0
HanXRQChr17g0555151 Helianthus annuus HOM05D003471 ORTHO05D004079 1.2e-09 66.2 64 53.1
SalBow1G7059 Salvia bowleyana HOM05D003471 ORTHO05D004079 1.2e-09 66.2 69 56.5
Sed0018356 Sechium edule HOM05D003471 ORTHO05D004079 1.2e-09 66.2 55 60.0
CsaV3_7G004440 Cucumis sativus L. HOM05D003471 ORTHO05D004079 1.5e-09 65.9 66 54.5
Sed0003246 Sechium edule HOM05D003471 ORTHO05D004079 1.5e-09 65.9 63 52.4
Migut.H01185 Erythranthe guttata HOM05D003471 ORTHO05D004079 2.0e-09 65.5 61 57.4
Glyma.13G297200 Glycine max HOM05D003471 ORTHO05D004079 2.6e-09 65.1 67 53.7
Lalb_Chr14g0366921 Lupinus albus HOM05D003471 ORTHO05D004079 2.6e-09 65.1 66 59.1
EL10Ac9g20766 Beta vulgaris HOM05D003471 ORTHO05D004079 3.4e-09 64.7 69 55.1
Nn1g06557 Nelumbo nucifera HOM05D003471 ORTHO05D004079 3.4e-09 64.7 63 57.1
Lsat_1_v5_gn_4_66480 Lactuca sativa HOM05D003471 ORTHO05D004079 7.5e-09 63.5 69 55.1
MBI06_g06474_MAGBIO Magnolia biondii HOM05D003471 ORTHO05D004079 7.5e-09 63.5 68 52.9
Medtr2g090360 Medicago truncatula HOM05D003471 ORTHO05D004079 7.5e-09 63.5 68 54.4
Ciclev10014791m.g Citrus clementina HOM05D003471 ORTHO05D004079 1.3e-08 62.8 63 54.0
BcaC09g50493 Brassica carinata HOM05D003471 ORTHO05D004079 2.2e-08 62.0 60 53.3
PSO675G4165 Papaver somniferum HOM05D003471 ORTHO05D004079 4.9e-08 60.8 62 56.5
Actinidia30472 Actinidia chinensis HOM05D003471 ORTHO05D004079 8.3e-08 60.1 52 59.6
SHI10410 Sapria himalayana HOM05D003471 ORTHO05D004079 8.3e-08 60.1 57 50.9
TPR.G6412 Trifolium pratense HOM05D000230 ORTHO05D000176 2.4e-07 58.5 61 57.4
PSO541G1782 Papaver somniferum HOM05D003471 ORTHO05D004079 3.2e-07 58.2 62 54.8
Oeu017967.1 Olea europaea HOM05D003471 ORTHO05D004079 9.2e-07 56.6 54 51.9
TAR624G0242 Trochodendron aralioides HOM05D003471 ORTHO05D004079 1.2e-06 56.2 66 51.5
TAR626G1575 Trochodendron aralioides HOM05D003471 ORTHO05D004079 3.5e-06 54.7 55 58.2


User provided reference genes

Program Settings