Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 3.3e-109 398.7 248 100.0
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 2.9e-89 332.4 225 75.1
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 4.0e-86 322.0 224 72.8
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.8e-82 307.8 224 80.8
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.8e-82 307.8 224 80.8
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 7.3e-80 301.2 224 79.5
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.3e-80 301.2 224 79.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.6e-79 298.9 231 69.3
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 4.0e-78 295.4 225 66.7
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 6.8e-78 294.7 204 85.8
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 7.5e-77 291.2 225 72.9
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 9.8e-77 290.8 222 67.6
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 8.3e-76 287.7 232 63.8
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.4e-75 287.0 232 65.9
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 2.4e-75 286.2 234 64.1
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 3.2e-75 285.8 224 76.8
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 7.0e-75 284.6 225 72.4
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 9.2e-75 284.3 229 64.6
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.7e-74 282.7 233 62.7
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.8e-74 281.2 226 76.1
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-73 280.8 233 62.2
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.0e-73 280.8 224 69.2
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 1.0e-73 280.8 225 68.4
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.3e-73 280.4 213 65.7
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.3e-73 279.6 225 75.1
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.3e-73 279.6 225 63.6
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 6.6e-73 278.1 232 62.9
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 6.6e-73 278.1 226 65.5
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.5e-72 276.9 234 66.2
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 5.6e-72 275.0 217 74.2
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.2e-71 273.9 201 81.1
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.1e-71 273.1 236 61.9
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 2.8e-71 272.7 225 69.8
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.1e-70 270.8 204 72.1
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.1e-70 269.2 237 59.9
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.1e-70 269.2 243 63.8
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 5.2e-70 268.5 210 70.5
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 6.8e-70 268.1 222 60.4
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 8.9e-70 267.7 228 69.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.2e-69 267.3 200 66.0
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.5e-69 266.9 211 72.0
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.5e-69 266.9 204 71.1
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 2.0e-69 266.5 215 61.4
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 5.8e-69 265.0 234 62.0
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 9.9e-69 264.2 202 66.8
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 9.9e-69 264.2 217 61.8
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.7e-68 263.5 214 70.1
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.7e-68 263.5 234 58.5
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 1.7e-68 263.5 224 67.9
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.2e-68 263.1 237 60.3
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 2.2e-68 263.1 204 72.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 3.7e-68 262.3 225 60.0
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 4.9e-68 261.9 225 59.1
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 6.4e-68 261.5 225 59.6
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 8.3e-68 261.2 230 70.0
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 8.3e-68 261.2 222 61.3
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 8.3e-68 261.2 229 57.2
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.9e-67 260.0 229 68.6
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.9e-67 260.0 205 64.4
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.4e-67 259.6 229 59.0
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 2.7e-66 256.1 222 70.3
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 2.3e-65 253.1 221 62.9
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 3.0e-65 252.7 230 56.1
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 3.9e-65 252.3 202 63.4
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.9e-65 252.3 233 61.8
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 8.6e-65 251.1 203 66.5
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.9e-64 250.0 221 54.8
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 4.3e-64 248.8 199 69.8
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.6e-63 246.9 216 57.9
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.6e-63 245.7 228 66.7
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 6.2e-63 245.0 208 72.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 2.4e-62 243.0 247 55.5
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 2.4e-62 243.0 206 60.2
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 3.1e-62 242.7 202 57.4
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 4.0e-62 242.3 202 70.8
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 8.9e-62 241.1 213 57.3
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.2e-61 240.7 232 56.0
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 2.0e-61 240.0 225 53.8
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 4.4e-61 238.8 240 64.2
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 1.3e-60 237.3 225 57.8
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 4.9e-60 235.3 221 52.9
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 4.9e-60 235.3 204 60.8
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 6.4e-60 235.0 231 55.0
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.1e-59 231.5 227 62.1
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.2e-59 231.1 227 62.1
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.2e-58 230.7 227 63.0
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 4.6e-58 228.8 200 63.0
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.7e-57 226.9 241 58.5
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 1.7e-57 226.9 212 64.2
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 3.0e-57 226.1 225 56.4
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 1.5e-56 223.8 247 50.6
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.9e-56 223.4 230 59.1
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.9e-56 223.4 234 59.4
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 4.3e-56 222.2 232 59.9
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 7.3e-56 221.5 232 59.9
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 7.3e-56 221.5 222 53.2
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 9.6e-56 221.1 222 52.7
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 1.2e-55 220.7 232 59.5
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.8e-55 219.5 229 60.7
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.8e-55 219.5 237 60.8
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.8e-54 216.9 241 56.8
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 1.8e-54 216.9 241 56.8
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 4.0e-54 215.7 191 55.0
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 5.3e-54 215.3 222 59.5
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 3.4e-53 212.6 232 58.6
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 4.4e-53 212.2 235 50.6
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.2e-52 209.9 226 62.8
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.2e-52 209.9 226 62.8
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.2e-52 209.9 225 64.9
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.4e-51 207.2 203 61.6
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 3.2e-51 206.1 222 57.7
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 4.2e-51 205.7 233 49.8
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.5e-50 202.6 205 62.9
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.5e-50 202.6 205 62.9
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.5e-50 202.6 205 62.9
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.5e-50 202.6 205 62.9
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 3.0e-49 199.5 205 50.2
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 3.0e-49 199.5 221 56.6
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.9e-49 199.1 205 51.7
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.9e-49 199.1 205 51.7
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.5e-48 197.2 185 53.5
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 3.3e-48 196.1 178 53.4
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 4.3e-48 195.7 193 53.9
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 9.6e-48 194.5 189 59.8
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 9.6e-48 194.5 205 50.2
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.8e-47 193.0 178 66.9
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 3.6e-47 192.6 178 56.7
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.1e-46 191.0 180 52.8
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 3.1e-46 189.5 181 50.8
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 2.0e-45 186.8 169 74.6
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 5.4e-43 178.7 203 54.2
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 5.4e-43 178.7 195 63.6
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.1e-42 176.8 202 53.5
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.1e-42 176.8 202 53.5
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 6.0e-42 175.3 145 60.0
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 8.7e-41 171.4 193 48.7
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 9.6e-40 167.9 195 43.6
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 5.3e-38 162.2 212 43.4
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 5.3e-38 162.2 224 43.3
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 3.4e-37 159.5 177 66.1
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 7.6e-37 158.3 118 67.8
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.3e-36 157.5 235 36.6
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.2e-36 156.8 192 41.7
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 2.9e-36 156.4 199 44.7
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 9.3e-35 151.4 212 40.6
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.2e-34 151.0 229 42.8
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 1.2e-34 151.0 212 40.6
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.6e-34 150.6 212 39.6
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.1e-34 150.2 226 41.6
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 6.7e-33 145.2 185 40.0
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 8.7e-33 144.8 199 39.7
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 4.8e-31 139.0 129 60.5
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 8.2e-31 138.3 205 40.0
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.4e-30 137.5 154 47.4
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 6.9e-30 135.2 211 37.9
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 4.9e-28 129.0 197 37.1
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 5.3e-22 109.0 138 47.1
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 5.9e-21 105.5 201 36.3
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.2e-20 103.6 88 64.8
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.6e-18 97.4 153 35.9
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.8e-17 94.0 160 33.8
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 1.2e-13 81.3 62 62.9
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 7.7e-13 78.6 62 61.3
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 8.5e-12 75.1 157 29.3
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.9e-11 73.9 67 56.7
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 3.6e-10 69.7 60 55.0
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.8e-09 67.4 235 21.7
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 1.1e-06 58.2 216 24.1
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 4.1e-06 56.2 35 71.4


User provided reference genes

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