Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 5.3e-173 610.9 306 100.0
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.3e-66 256.1 207 65.7
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 5.0e-54 215.7 150 70.0
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 9.1e-48 194.9 201 55.2
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.2e-47 194.5 165 64.2
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.9e-45 187.2 148 64.2
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 4.7e-44 182.6 148 62.8
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 8.8e-43 178.3 147 61.9
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 1.1e-42 177.9 159 58.5
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.1e-42 177.9 147 63.3
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.5e-42 177.6 147 59.9
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.7e-42 174.9 147 63.3
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.3e-41 174.5 149 59.7
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.7e-41 174.1 175 53.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.2e-41 173.7 159 56.6
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.2e-41 173.7 147 62.6
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 3.7e-41 172.9 170 57.1
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 3.7e-41 172.9 186 52.7
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 3.7e-41 172.9 149 59.1
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.7e-41 172.9 147 62.6
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.8e-41 172.6 152 57.2
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 4.8e-41 172.6 183 51.4
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.4e-40 171.0 198 51.0
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-40 171.0 159 55.3
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.4e-40 170.2 167 53.3
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.1e-40 169.9 191 50.8
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 3.1e-40 169.9 184 51.6
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 5.3e-40 169.1 147 59.2
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 7.0e-40 168.7 147 57.1
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 7.0e-40 168.7 147 57.1
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 9.1e-40 168.3 148 62.8
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 9.1e-40 168.3 147 57.8
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 2.0e-39 167.2 147 57.8
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.6e-39 166.8 148 58.8
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 5.9e-39 165.6 193 51.3
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.0e-38 164.9 178 50.6
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.7e-38 164.1 147 55.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.7e-38 164.1 150 58.7
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.2e-38 163.7 193 46.1
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 2.2e-38 163.7 194 45.4
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.8e-38 162.9 147 61.2
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 5.0e-38 162.5 162 53.1
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 6.5e-38 162.2 166 53.0
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 6.5e-38 162.2 148 60.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 8.5e-38 161.8 183 50.8
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 8.5e-38 161.8 181 49.7
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 8.5e-38 161.8 184 49.5
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 8.5e-38 161.8 147 59.2
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.1e-37 161.4 148 60.8
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-37 161.0 161 56.5
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.9e-37 160.6 145 57.2
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 4.2e-37 159.5 162 53.1
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.2e-37 159.5 147 58.5
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 7.2e-37 158.7 142 56.3
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 7.2e-37 158.7 167 55.7
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 7.2e-37 158.7 158 53.8
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 9.4e-37 158.3 194 44.3
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 9.4e-37 158.3 146 57.5
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.2e-36 157.9 197 45.7
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.2e-36 157.9 162 52.5
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.2e-36 157.9 145 53.8
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.6e-36 157.5 143 58.7
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 2.1e-36 157.1 183 50.3
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 2.7e-36 156.8 191 50.8
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.7e-36 156.8 182 52.2
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 3.6e-36 156.4 182 51.6
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 8.0e-36 155.2 146 55.5
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.0e-35 154.8 142 56.3
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.0e-35 154.8 162 51.2
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.3e-35 153.7 148 51.4
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.3e-35 153.7 147 54.4
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 3.0e-35 153.3 148 54.7
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 5.2e-35 152.5 193 46.1
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 6.7e-35 152.1 184 45.1
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.1e-34 151.4 176 48.3
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 1.5e-34 151.0 167 50.3
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 4.4e-34 149.4 149 55.0
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 5.7e-34 149.1 185 46.5
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 7.4e-34 148.7 149 54.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 7.4e-34 148.7 146 54.1
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 9.7e-34 148.3 182 47.3
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.3e-33 147.9 142 52.8
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 4.8e-33 146.0 142 53.5
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 8.2e-33 145.2 143 53.8
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.1e-32 144.8 147 51.7
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.4e-32 143.7 182 42.3
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 5.3e-32 142.5 164 47.0
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 2.0e-31 140.6 169 50.9
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.6e-31 140.2 183 44.8
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.5e-31 139.8 158 49.4
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 3.8e-30 136.3 152 53.3
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 5.0e-30 136.0 159 47.8
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 6.5e-30 135.6 143 49.7
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 8.5e-30 135.2 163 50.3
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.9e-29 134.0 118 55.9
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.5e-29 133.7 143 50.3
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.2e-28 131.3 190 44.2
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.1e-28 130.6 161 48.4
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 5.2e-27 125.9 156 48.7
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.0e-26 124.0 167 46.1
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 2.6e-26 123.6 150 46.7
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 3.4e-26 123.2 162 45.1
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-26 123.2 150 46.7
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 3.4e-26 123.2 141 49.6
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 3.4e-26 123.2 152 48.0
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.4e-26 122.9 155 45.8
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 9.8e-26 121.7 151 47.7
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-25 121.3 150 47.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 1.3e-25 121.3 151 46.4
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.3e-25 121.3 122 56.6
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.7e-25 120.9 171 42.1
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 4.8e-25 119.4 151 45.7
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 4.8e-25 119.4 151 45.7
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-24 117.5 151 47.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 9.1e-24 115.2 147 44.2
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.6e-23 114.4 178 42.1
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.7e-23 113.6 150 42.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 3.5e-23 113.2 174 39.7
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 5.9e-23 112.5 151 43.0
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 7.7e-23 112.1 100 56.0
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 7.7e-23 112.1 165 42.4
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.0e-22 111.7 150 41.3
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 3.8e-22 109.8 118 50.0
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 3.8e-22 109.8 156 41.7
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.9e-21 107.5 154 43.5
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.5e-21 107.1 100 53.0
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.5e-21 107.1 167 41.3
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.6e-20 104.4 89 61.8
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 8.0e-20 102.1 197 36.5
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 5.2e-19 99.4 176 34.1
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 6.8e-19 99.0 158 39.2
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 1.2e-18 98.2 176 40.9
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-18 97.8 176 40.9
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 3.7e-17 93.2 151 37.7
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.1e-16 91.7 185 35.7
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 1.7e-14 84.3 184 35.9
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 5.0e-14 82.8 184 35.3
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 6.6e-14 82.4 184 34.2
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 6.6e-14 82.4 153 35.9
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.1e-12 77.4 152 36.8
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.4e-11 74.7 149 34.2
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-09 68.2 73 49.3
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 4.1e-08 63.2 62 54.8
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.4e-08 62.8 54 57.4
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 5.9e-07 59.3 56 48.2
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-06 58.2 37 70.3
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 3.9e-06 56.6 58 46.6
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 5.0e-06 56.2 84 40.5


User provided reference genes

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