Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G304700 Prunus persica HOM05D006309 ORTHO05D007937 3.6e-51 204.5 97 100.0
Nn7g36656 Nelumbo nucifera HOM05D006309 ORTHO05D007937 1.1e-47 193.0 97 91.8
QL03p010963 Quercus lobata HOM05D006309 ORTHO05D007937 2.4e-47 191.8 96 92.7
Manes.09G181100 Manihot esculenta HOM05D006309 ORTHO05D007937 5.4e-47 190.7 97 91.8
TAR636G2194 Trochodendron aralioides HOM05D006309 ORTHO05D007937 5.4e-47 190.7 96 91.7
Dinv24513 Davidia involucrata HOM05D006309 ORTHO05D007937 2.1e-46 188.7 94 93.6
Duzib205G1677 Durio zibethinus HOM05D006309 ORTHO05D007937 2.7e-46 188.3 97 90.7
MD12G1199900 Malus domestica HOM05D006309 ORTHO05D007937 3.5e-46 188.0 97 90.7
Cpa.g.sc48.50 Carica papaya HOM05D006309 ORTHO05D007937 4.6e-46 187.6 97 89.7
arahy.Tifrunner.gnm1.ann1.RC3JIS Arachis hypogaea HOM05D006309 ORTHO05D007937 7.8e-46 186.8 93 91.4
Nitab4.5_0000936g0050 Nicotiana tabacum HOM05D006309 ORTHO05D007937 7.8e-46 186.8 94 91.5
vmacro16416 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 7.8e-46 186.8 93 93.5
Ciclev10013195m.g Citrus clementina HOM05D006309 ORTHO05D007937 1.0e-45 186.4 97 88.7
Cc02_g35850 Coffea canephora HOM05D006309 ORTHO05D007937 1.0e-45 186.4 94 90.4
Oeu061901.1 Olea europaea HOM05D006309 ORTHO05D007937 1.0e-45 186.4 94 93.6
Psat6g155680 Pisum sativum HOM05D006309 ORTHO05D007937 1.3e-45 186.0 93 90.3
arahy.Tifrunner.gnm1.ann1.P9U7KY Arachis hypogaea HOM05D006309 ORTHO05D007937 1.7e-45 185.7 93 90.3
arahy.Tifrunner.gnm1.ann1.VGN228 Arachis hypogaea HOM05D006309 ORTHO05D007937 1.7e-45 185.7 93 90.3
CAN.G637.25 Capsicum annuum HOM05D006309 ORTHO05D007937 1.7e-45 185.7 94 91.5
Ca_10200_v3 Cicer arietinum L. HOM05D006309 ORTHO05D007937 1.7e-45 185.7 93 89.2
Peaxi162Scf00171g00731 Petunia axillaris HOM05D006309 ORTHO05D007937 1.7e-45 185.7 94 90.4
Nitab4.5_0004454g0020 Nicotiana tabacum HOM05D006309 ORTHO05D007937 2.3e-45 185.3 94 90.4
Rhsim11G0105200 Rhododendron simsii HOM05D006309 ORTHO05D007937 2.3e-45 185.3 93 92.5
Solyc03g098120.3 Solanum lycopersicum HOM05D006309 ORTHO05D007937 2.3e-45 185.3 94 91.5
Sopen03g028820 Solanum pennellii HOM05D006309 ORTHO05D007937 2.3e-45 185.3 94 91.5
VMungo0720G0633 Vigna mungo HOM05D006309 ORTHO05D007937 3.9e-45 184.5 93 91.4
Rhsim11G0104500 Rhododendron simsii HOM05D006309 ORTHO05D007937 5.1e-45 184.1 93 90.3
Haze_03988 Corylus avellana HOM05D006309 ORTHO05D007937 6.6e-45 183.7 97 88.7
Lalb_Chr02g0147551 Lupinus albus HOM05D006309 ORTHO05D007937 6.6e-45 183.7 94 86.2
PGSC0003DMG400031051 Solanum tuberosum HOM05D006309 ORTHO05D007937 6.6e-45 183.7 94 90.4
Phvul.007G205000 Phaseolus vulgaris HOM05D006309 ORTHO05D007937 1.1e-44 183.0 93 90.3
Ah.06g190700 Amaranthus hybridus HOM05D006309 ORTHO05D007937 1.5e-44 182.6 93 90.3
CSS0019637 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.5e-44 182.6 93 91.4
CSS0033999 Camellia sinensis var. sinensis HOM05D006309 ORTHO05D007937 1.5e-44 182.6 93 91.4
FvH4_6g08490 Fragaria vesca HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 86.6
FAN02G0285 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 86.6
FAN05G1622 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 86.6
FAN09G1610 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 86.6
FAN14G3239 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 86.6
Lj5g0003279 Lotus japonicus HOM05D006309 ORTHO05D007937 1.5e-44 182.6 97 88.7
Lalb_Chr21g0310061 Lupinus albus HOM05D006309 ORTHO05D007937 1.9e-44 182.2 94 85.1
Atru.chr12.1543 Acer truncatum HOM05D006309 ORTHO05D007937 2.5e-44 181.8 95 88.4
Glyma.20G090800 Glycine max HOM05D006309 ORTHO05D007937 2.5e-44 181.8 97 86.6
Glyma.20G092200 Glycine max HOM05D006309 ORTHO05D007937 2.5e-44 181.8 97 86.6
SalBow5G3054 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.3e-44 181.4 94 90.4
Hund05518 Selenicereus undatus HOM05D006309 ORTHO05D007937 4.3e-44 181.0 93 90.3
CiPaw.07G036200 Carya illinoinensis HOM05D006309 ORTHO05D007937 5.6e-44 180.6 97 86.6
Thecc.03G310900 Theobroma cacao HOM05D006309 ORTHO05D007937 5.6e-44 180.6 97 86.6
vmacro01669 Vaccinium macrocarpon HOM05D006309 ORTHO05D007937 5.6e-44 180.6 95 90.5
CANSAT54G2801 Cannabis sativa HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 88.7
CDE09G0003 Ceratophyllum demersum HOM05D006309 ORTHO05D007937 7.3e-44 180.3 94 85.1
Hma1.2p1_0759F.1_g213920 Hydrangea macrophylla HOM05D006309 ORTHO05D007937 7.3e-44 180.3 93 89.2
Medtr1g484930 Medicago truncatula HOM05D006309 ORTHO05D007937 7.3e-44 180.3 93 86.0
RcHm_v2.0_Chr3g0458531 Rosa chinensis HOM05D006309 ORTHO05D007937 7.3e-44 180.3 97 85.6
Actinidia22855 Actinidia chinensis HOM05D006309 ORTHO05D007937 9.6e-44 179.9 93 89.2
ClCG02G014650 Citrullus lanatus HOM05D006309 ORTHO05D007937 9.6e-44 179.9 94 88.3
Gohir.D08G174300 Gossypium hirsutum HOM05D006309 ORTHO05D007937 1.2e-43 179.5 94 89.4
Gorai.004G182000 Gossypium raimondii HOM05D006309 ORTHO05D007937 1.2e-43 179.5 94 89.4
ECA233G1704 Erigeron canadensis HOM05D006309 ORTHO05D007937 1.6e-43 179.1 94 86.2
Potri.005G002900 Populus trichocarpa HOM05D006309 ORTHO05D007937 2.1e-43 178.7 94 88.3
MELO3C004152.2 Cucumis melo HOM05D006309 ORTHO05D007937 2.8e-43 178.3 95 85.3
Gohir.A08G153400 Gossypium hirsutum HOM05D006309 ORTHO05D007937 2.8e-43 178.3 94 89.4
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 2.8e-43 178.3 94 86.2
PGR083G2709 Punica granatum HOM05D006309 ORTHO05D007937 2.8e-43 178.3 95 85.3
AUR62000475 Chenopodium quinoa HOM05D006309 ORTHO05D007937 3.6e-43 177.9 93 86.0
Sc16g0009400 Simmondsia chinensis HOM05D006309 ORTHO05D007937 3.6e-43 177.9 94 85.1
TWI36G0052 Tripterygium wilfordii HOM05D006309 ORTHO05D007937 4.7e-43 177.6 94 87.2
Migut.H01672 Erythranthe guttata HOM05D006309 ORTHO05D007937 6.2e-43 177.2 93 88.2
FvH4_2g19190 Fragaria vesca HOM05D006309 ORTHO05D007937 6.2e-43 177.2 97 84.5
FAN24G3038 Fragaria x ananassa HOM05D006309 ORTHO05D007937 6.2e-43 177.2 97 84.5
Sed0021183 Sechium edule HOM05D006309 ORTHO05D007937 6.2e-43 177.2 94 87.2
ATR0796G010 Amborella trichopoda HOM05D006309 ORTHO05D007937 1.1e-42 176.4 94 87.2
Prupe.8G045300 Prunus persica HOM05D006309 ORTHO05D007937 1.4e-42 176.0 97 87.6
TPR.G2591 Trifolium pratense HOM05D006309 ORTHO05D007937 1.4e-42 176.0 93 82.8
CiPaw.04G111200 Carya illinoinensis HOM05D006309 ORTHO05D007937 1.8e-42 175.6 93 88.2
AUR62017099 Chenopodium quinoa HOM05D006309 ORTHO05D007937 2.4e-42 175.3 93 86.0
EL10Ac4g09558 Beta vulgaris HOM05D006309 ORTHO05D007937 3.1e-42 174.9 95 87.4
FAN15G2822 Fragaria x ananassa HOM05D006309 ORTHO05D007937 1.2e-41 172.9 97 82.5
Sc09g0002420 Simmondsia chinensis HOM05D006309 ORTHO05D007937 1.2e-41 172.9 94 81.9
Aqoxy2G02488 Aquilegia oxysepala HOM05D006309 ORTHO05D007937 1.5e-41 172.6 95 78.9
GSVIVG01031328001 Vitis vinifera HOM05D006309 ORTHO05D007937 1.5e-41 172.6 93 84.9
Os01g0250600 Oryza sativa ssp. japonica HOM05D006309 ORTHO05D007937 2.0e-41 172.2 94 81.9
AL1G67090 Arabidopsis lyrata HOM05D006309 ORTHO05D007937 2.6e-41 171.8 93 83.9
Carub.0002s0712 Capsella rubella HOM05D006309 ORTHO05D007937 2.6e-41 171.8 93 83.9
BcaB07g31141 Brassica carinata HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
BcaC04g22081 Brassica carinata HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
C09p23680 Brassica napus HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
BraA09t37510Z Brassica rapa HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
CsaV3_2G007320 Cucumis sativus L. HOM05D006309 ORTHO05D007937 3.4e-41 171.4 93 86.0
Sp1g28800 Schrenkiella parvula HOM05D006309 ORTHO05D007937 3.4e-41 171.4 94 81.9
CARHR288700 Cardamine hirsuta HOM05D006309 ORTHO05D007937 5.8e-41 170.6 93 82.8
Thhalv10010969m.g Eutrema salsugineum HOM05D006309 ORTHO05D007937 5.8e-41 170.6 94 83.0
Sp2g05970 Schrenkiella parvula HOM05D006309 ORTHO05D007937 5.8e-41 170.6 94 80.9
A09p18900 Brassica napus HOM05D006309 ORTHO05D007937 7.6e-41 170.2 94 81.9
BolC9t55290H Brassica oleracea HOM05D006309 ORTHO05D007937 7.6e-41 170.2 94 80.9
arahy.Tifrunner.gnm1.ann1.01IKZ7 Arachis hypogaea HOM05D006309 ORTHO05D007937 9.9e-41 169.9 126 67.5
THA.LOC104820476 Tarenaya hassleriana HOM05D006309 ORTHO05D007937 9.9e-41 169.9 96 78.1
AT1G57540 Arabidopsis thaliana HOM05D006309 ORTHO05D007937 1.3e-40 169.5 93 81.7
HanXRQChr08g0212181 Helianthus annuus HOM05D006309 ORTHO05D007937 1.7e-40 169.1 88 86.4
Aa31LG2G11310 Aethionema arabicum HOM05D006309 ORTHO05D007937 2.2e-40 168.7 94 80.9
Lj4g0016187 Lotus japonicus HOM05D006309 ORTHO05D007937 1.1e-39 166.4 93 83.9
PSO210G0390 Papaver somniferum HOM05D006309 ORTHO05D007937 3.2e-39 164.9 95 78.9
PSO761G0726 Papaver somniferum HOM05D006309 ORTHO05D007937 3.2e-39 164.9 95 78.9
SalBow4G0401 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.2e-39 164.9 117 71.8
SalBow4G1963 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.2e-39 164.9 117 71.8
SalBow4G2407 Salvia bowleyana HOM05D006309 ORTHO05D007937 3.2e-39 164.9 117 71.8
unitig_62.g23615 Utricularia gibba HOM05D006309 ORTHO05D007937 4.2e-39 164.5 93 81.7
Sabra13G0001700 Salix brachista HOM05D006309 ORTHO05D007937 5.4e-39 164.1 112 72.3
DCAR_007528 Daucus carota HOM05D006309 ORTHO05D007937 1.2e-38 162.9 108 74.1
Cfa012394 Carpinus fangiana HOM05D006309 ORTHO05D007937 5.1e-37 157.5 84 86.9
Sabra05G0000300 Salix brachista HOM05D006309 ORTHO05D007937 1.1e-36 156.4 137 59.9
Sabra05G0014400 Salix brachista HOM05D006309 ORTHO05D007937 1.1e-36 156.4 137 59.9
EL10Ac4g07573 Beta vulgaris HOM05D006309 ORTHO05D007937 2.4e-34 148.7 93 78.5
MBI18_g10373_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 9.0e-34 146.7 97 77.3
Dinv30948 Davidia involucrata HOM05D006309 ORTHO05D007937 6.0e-30 134.0 70 88.6
Mapoly0075s0044 Marchantia polymorpha HOM05D006309 ORTHO05D007937 1.4e-23 112.8 96 53.1
Pp3c8_1240 Physcomitrium patens HOM05D006309 ORTHO05D007937 6.0e-22 107.5 93 52.7
HanXRQChr06g0180851 Helianthus annuus HOM05D006309 ORTHO05D007937 1.0e-21 106.7 50 96.0
HanXRQChr16g0506271 Helianthus annuus HOM05D006309 ORTHO05D007937 1.0e-21 106.7 50 96.0
MBI06_g06498_MAGBIO Magnolia biondii HOM05D006309 ORTHO05D007937 2.4e-18 95.5 54 83.3
Glyma.09G093300 Glycine max HOM05D006309 ORTHO05D000504 4.0e-18 94.7 59 71.2
COL.COLO4_16932 Corchorus olitorius HOM05D006309 ORTHO05D007937 1.5e-17 92.8 48 89.6
Zm00001eb239560 Zea mays HOM05D006309 ORTHO05D007937 1.3e-16 89.7 50 78.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 4.9e-16 87.8 49 79.6
Potri.013G002301 Populus trichocarpa HOM05D006309 ORTHO05D007937 2.4e-10 68.9 41 80.5
BNapus_Darmor_BZH_scaffold_223p00020 Brassica napus HOM05D006309 ORTHO05D007937 5.3e-10 67.8 39 79.5
TAR627G1128 Trochodendron aralioides HOM05D006309 ORTHO05D007937 2.2e-08 62.4 39 79.5


User provided reference genes

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