Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 7.0e-251 870.2 442 100.0
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 8.3e-228 793.5 442 89.6
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 9.5e-224 780.0 442 89.1
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 1.4e-214 749.6 438 84.5
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.6e-205 717.2 442 80.8
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 2.8e-199 698.7 442 77.8
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 7.1e-195 684.1 431 77.0
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 2.5e-192 675.6 436 77.1
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 2.5e-192 675.6 438 76.3
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 5.6e-192 674.5 431 77.0
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.3e-191 673.3 435 76.6
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 1.3e-191 673.3 440 75.7
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 1.6e-191 672.9 438 75.8
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 3.7e-191 671.8 434 75.1
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 2.4e-190 669.1 432 75.5
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.1e-190 668.7 440 74.8
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 4.0e-190 668.3 430 76.7
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.5e-189 666.4 431 75.9
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 1.7e-188 662.9 441 73.5
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.2e-188 662.5 435 75.2
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 3.8e-188 661.8 430 75.8
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 6.4e-188 661.0 435 74.7
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 2.5e-187 659.1 433 73.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.5e-187 659.1 430 75.3
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 9.3e-187 657.1 430 75.1
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 2.1e-186 656.0 432 73.1
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 2.1e-186 656.0 431 74.2
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 3.5e-186 655.2 430 75.1
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 4.6e-186 654.8 430 73.5
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 1.8e-185 652.9 432 72.9
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.8e-185 652.9 438 74.0
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.5e-184 649.8 432 72.7
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 3.3e-184 648.7 432 72.5
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.3e-183 646.7 432 71.8
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.3e-183 646.7 442 71.9
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 6.2e-183 644.4 432 71.8
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 6.2e-183 644.4 434 72.6
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 6.2e-183 644.4 432 71.8
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 8.2e-183 644.0 431 72.9
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.1e-182 643.7 431 72.6
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 9.0e-182 640.6 432 71.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.2e-181 640.2 432 73.1
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.0e-181 639.4 435 71.5
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 4.5e-181 638.3 431 72.9
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 7.6e-181 637.5 441 70.1
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 3.8e-180 635.2 444 73.6
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 3.8e-180 635.2 480 67.5
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 1.1e-179 633.6 431 71.2
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 2.7e-178 629.0 433 71.1
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 3.5e-178 628.6 441 68.9
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 4.6e-178 628.2 434 72.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 5.1e-177 624.8 431 70.8
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.1e-176 623.6 464 68.8
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.1e-176 623.6 439 71.3
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 7.4e-176 620.9 438 70.5
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 1.3e-175 620.2 438 70.3
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.3e-175 620.2 429 71.3
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 3.7e-175 618.6 439 69.7
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 8.2e-175 617.5 443 69.5
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 2.4e-174 615.9 433 70.7
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 5.3e-174 614.8 431 70.5
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.5e-173 613.2 431 70.5
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.5e-173 613.2 426 68.3
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 4.5e-173 611.7 380 80.5
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 5.9e-173 611.3 431 70.1
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 5.9e-173 611.3 431 70.8
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.0e-172 610.5 380 80.3
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 3.8e-172 608.6 431 70.1
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 8.5e-172 607.4 431 69.8
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.4e-171 606.7 429 68.1
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 1.4e-171 606.7 430 68.8
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 4.2e-171 605.1 431 70.5
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 6.1e-170 601.3 451 68.3
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 8.8e-169 597.4 441 66.2
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 4.3e-168 595.1 524 59.0
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 9.7e-168 594.0 416 70.0
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 1.7e-167 593.2 430 69.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.7e-164 583.2 475 63.2
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 2.9e-164 582.4 473 63.8
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 6.5e-164 581.3 416 69.5
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 7.2e-163 577.8 438 65.5
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 7.9e-162 574.3 373 75.3
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.8e-161 573.2 438 66.0
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 3.9e-161 572.0 474 62.9
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 3.9e-161 572.0 518 57.3
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 9.7e-160 567.4 437 65.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.8e-159 565.8 431 67.3
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 4.8e-159 565.1 455 62.6
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.8e-158 563.1 431 66.6
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 8.5e-156 554.3 438 65.3
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 8.5e-156 554.3 424 67.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 1.4e-155 553.5 422 66.1
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 4.7e-154 548.5 380 71.6
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 3.7e-151 538.9 377 70.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 8.2e-151 537.7 363 74.4
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 4.2e-147 525.4 726 43.0
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 3.6e-146 522.3 452 61.5
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 8.3e-143 511.1 363 71.1
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.1e-142 510.8 320 79.4
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 3.2e-139 499.2 431 60.6
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.2e-136 490.7 704 43.5
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 4.5e-133 478.8 444 56.1
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.7e-124 450.3 432 52.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 3.1e-121 439.5 339 67.0
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 3.1e-121 439.5 301 73.4
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.1e-118 431.0 445 49.7
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 3.2e-118 429.5 341 65.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 3.1e-113 412.9 296 68.9
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 4.6e-109 399.1 434 49.8
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 6.6e-100 368.6 358 53.1
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 1.3e-95 354.4 222 79.3
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 6.0e-85 318.9 237 73.4
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.1e-82 310.5 245 65.3
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.8e-82 310.1 220 70.5
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 5.4e-78 295.8 283 60.1
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 7.1e-78 295.4 215 75.3
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 4.3e-67 259.6 431 35.5
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.1e-65 255.0 161 78.9
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.1e-60 236.1 141 78.0
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 6.9e-57 225.7 441 35.8
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 7.2e-54 215.7 179 61.5
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 8.8e-52 208.8 133 78.2
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 7.4e-51 205.7 144 67.4
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 5.7e-43 179.5 141 64.5
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.6e-37 161.4 320 33.4
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.2e-36 156.4 150 51.3
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.8e-34 150.6 97 72.2
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 4.1e-33 146.7 201 46.3
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 7.0e-33 146.0 194 46.9
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 5.7e-27 126.3 120 54.2
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.3e-23 115.2 146 47.3
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 2.3e-20 104.4 78 57.7
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 4.4e-19 100.1 85 51.8
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.8e-18 97.4 52 80.8
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 5.0e-15 86.7 78 53.8
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 8.6e-15 85.9 78 55.1
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 5.6e-14 83.2 78 53.8
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 4.4e-11 73.6 43 76.7
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 1.1e-09 68.9 42 69.0
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.4e-09 67.8 47 68.1
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 3.2e-09 67.4 54 63.0
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 3.2e-09 67.4 37 86.5
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 3.2e-09 67.4 39 84.6


User provided reference genes

Program Settings