Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G298100 Prunus persica HOM05D015167 ORTHO05D010165 2.1e-32 141.7 71 100.0
Prupe.4G084700 Prunus persica HOM05D015167 ORTHO05D010165 5.6e-17 90.5 73 68.5
Hma1.2p1_0594F.1_g185930 Hydrangea macrophylla HOM05D010834 ORTHO05D013314 1.1e-15 86.3 67 61.2
Thecc.06G146000 Theobroma cacao HOM05D020069 ORTHO05D029914 2.2e-13 78.6 72 63.9
Cfa000909 Carpinus fangiana HOM05D015167 ORTHO05D010165 2.4e-12 75.1 71 59.2
Lj2C321T5 Lonicera japonica HOM05D008566 ORTHO05D010165 9.2e-12 73.2 67 56.7
FAN21G3853 Fragaria x ananassa HOM05D015167 ORTHO05D010165 1.6e-11 72.4 77 57.1
FAN16G3108 Fragaria x ananassa HOM05D015167 ORTHO05D010165 2.1e-11 72.0 77 57.1
FAN25G0863 Fragaria x ananassa HOM05D015167 ORTHO05D010165 2.1e-11 72.0 77 57.1
Haze_05645 Corylus avellana HOM05D015167 ORTHO05D010165 2.7e-11 71.6 71 56.3
FAN05G0855 Fragaria x ananassa HOM05D064248 ORTHO05D010165 7.8e-11 70.1 42 83.3
FAN14G5842 Fragaria x ananassa HOM05D064248 ORTHO05D010165 7.8e-11 70.1 42 83.3
Gohir.D05G149200 Gossypium hirsutum HOM05D008566 ORTHO05D010165 1.0e-10 69.7 71 53.5
Gorai.009G153200 Gossypium raimondii HOM05D008566 ORTHO05D010165 1.0e-10 69.7 71 53.5
Gohir.A05G146700 Gossypium hirsutum HOM05D008566 ORTHO05D010165 1.3e-10 69.3 71 52.1
QL05p055453 Quercus lobata HOM05D010834 ORTHO05D013314 1.7e-10 68.9 67 50.7
Medtr5g077630 Medicago truncatula HOM05D013029 ORTHO05D010165 2.3e-10 68.6 65 50.8
A06p46160 Brassica napus HOM05D008566 ORTHO05D010165 3.9e-10 67.8 76 50.0
BolC7t43472H Brassica oleracea HOM05D008566 ORTHO05D010165 3.9e-10 67.8 76 50.0
BraA06t27480Z Brassica rapa HOM05D008566 ORTHO05D010165 3.9e-10 67.8 76 50.0
Medtr1g089090 Medicago truncatula HOM05D013029 ORTHO05D010165 3.9e-10 67.8 65 49.2
BcaC06g31495 Brassica carinata HOM05D008566 ORTHO05D010165 6.6e-10 67.0 76 48.7
Lalb_Chr07g0187531 Lupinus albus HOM05D013029 ORTHO05D010165 8.6e-10 66.6 64 53.1
COL.COLO4_31024 Corchorus olitorius HOM05D008566 ORTHO05D010165 1.1e-09 66.2 73 54.8
C07p29300 Brassica napus HOM05D008566 ORTHO05D010165 1.5e-09 65.9 76 48.7
TPR.G9553 Trifolium pratense HOM05D013029 ORTHO05D010165 1.5e-09 65.9 63 52.4
Lalb_Chr13g0293931 Lupinus albus HOM05D013029 ORTHO05D010165 2.5e-09 65.1 64 50.0
C02p47100 Brassica napus HOM05D008566 ORTHO05D010165 3.3e-09 64.7 76 47.4
BolC2t10757H Brassica oleracea HOM05D008566 ORTHO05D010165 3.3e-09 64.7 76 47.4
BcaC03g16834 Brassica carinata HOM05D008566 ORTHO05D010165 4.3e-09 64.3 76 47.4
A02p29720 Brassica napus HOM05D008566 ORTHO05D010165 4.3e-09 64.3 76 47.4
BraA02t07995Z Brassica rapa HOM05D008566 ORTHO05D010165 4.3e-09 64.3 76 47.4
Thecc.06G146100 Theobroma cacao HOM05D008566 ORTHO05D010165 4.3e-09 64.3 67 53.7
TPR.G13296 Trifolium pratense HOM05D013029 ORTHO05D010165 4.3e-09 64.3 63 50.8
Manes.15G124200 Manihot esculenta HOM05D008566 ORTHO05D010165 7.3e-09 63.5 79 46.8
FAN16G1940 Fragaria x ananassa HOM05D028905 ORTHO05D013086 1.6e-08 62.4 70 50.0
BcaB07g30854 Brassica carinata HOM05D008566 ORTHO05D010165 3.6e-08 61.2 76 44.7
BcaC04g21730 Brassica carinata HOM05D008566 ORTHO05D010165 3.6e-08 61.2 76 46.1
FAN21G2527 Fragaria x ananassa HOM05D028905 ORTHO05D013086 3.6e-08 61.2 60 56.7
Sp2g11000 Schrenkiella parvula HOM05D008566 ORTHO05D010165 3.6e-08 61.2 75 46.7
Gohir.D10G044000 Gossypium hirsutum HOM05D010834 ORTHO05D013314 4.7e-08 60.8 69 44.9
BolC9t55698H Brassica oleracea HOM05D008566 ORTHO05D010165 8.1e-08 60.1 76 44.7
Carub.0008s0178 Capsella rubella HOM05D008566 ORTHO05D010165 8.1e-08 60.1 76 47.4
Gorai.011G046900 Gossypium raimondii HOM05D010834 ORTHO05D013314 1.1e-07 59.7 69 44.9
RcHm_v2.0_Chr5g0014601 Rosa chinensis HOM05D028905 ORTHO05D013086 1.4e-07 59.3 56 57.1
RcHm_v2.0_Chr5g0014611 Rosa chinensis HOM05D035414 ORTHO05D035881 1.4e-07 59.3 72 54.2
Lj4g0024606 Lotus japonicus HOM05D013029 ORTHO05D010165 1.8e-07 58.9 78 44.9
Oeu034127.1 Olea europaea HOM05D010834 ORTHO05D013314 3.1e-07 58.2 69 52.2
Sabra11G0065500 Salix brachista HOM05D008566 ORTHO05D010165 3.1e-07 58.2 61 47.5
Gohir.A06G139300 Gossypium hirsutum HOM05D020069 ORTHO05D046841 4.0e-07 57.8 73 47.9
Gohir.D10G044201 Gossypium hirsutum HOM05D010834 ORTHO05D010165 4.0e-07 57.8 67 49.3
Gorai.011G047200 Gossypium raimondii HOM05D010834 ORTHO05D010165 4.0e-07 57.8 67 49.3
Medtr4g083140 Medicago truncatula HOM05D013029 ORTHO05D010165 4.0e-07 57.8 61 49.2
A09p22100 Brassica napus HOM05D008566 ORTHO05D010165 5.2e-07 57.4 75 41.3
BraA09t37815Z Brassica rapa HOM05D008566 ORTHO05D010165 5.2e-07 57.4 75 41.3
Potri.011G082050 Populus trichocarpa HOM05D013029 ORTHO05D010165 5.2e-07 57.4 69 43.5
AL8G12340 Arabidopsis lyrata HOM05D008566 ORTHO05D010165 8.9e-07 56.6 76 44.7
Gorai.010G167800 Gossypium raimondii HOM05D020069 ORTHO05D046841 1.5e-06 55.8 73 46.6
BcaC09g51518 Brassica carinata HOM05D008566 ORTHO05D010165 2.0e-06 55.5 72 45.8
A01p10350 Brassica napus HOM05D008566 ORTHO05D010165 2.0e-06 55.5 72 45.8
C01p12300 Brassica napus HOM05D008566 ORTHO05D010165 2.0e-06 55.5 72 45.8
BolC1t01206H Brassica oleracea HOM05D008566 ORTHO05D010165 2.0e-06 55.5 72 45.8
BraA01t00983Z Brassica rapa HOM05D008566 ORTHO05D010165 2.0e-06 55.5 72 45.8
Migut.H01350 Erythranthe guttata HOM05D010834 ORTHO05D013314 2.0e-06 55.5 60 51.7
CARHR225230 Cardamine hirsuta HOM05D008566 ORTHO05D010165 4.4e-06 54.3 70 45.7
A03p51270 Brassica napus HOM05D008566 ORTHO05D010165 5.8e-06 53.9 70 45.7
BraA03t14209Z Brassica rapa HOM05D008566 ORTHO05D010165 5.8e-06 53.9 70 45.7
CARHR175660 Cardamine hirsuta HOM05D008566 ORTHO05D010165 5.8e-06 53.9 72 47.2
AL7G35940 Arabidopsis lyrata HOM05D008566 ORTHO05D010165 7.6e-06 53.5 70 44.3
Thecc.06G146200 Theobroma cacao HOM05D010834 ORTHO05D013314 7.6e-06 53.5 68 41.2
BcaNung02703 Brassica carinata HOM05D008566 ORTHO05D010165 9.9e-06 53.1 70 45.7
C07p49690 Brassica napus HOM05D008566 ORTHO05D010165 9.9e-06 53.1 70 45.7
BolC7t45469H Brassica oleracea HOM05D008566 ORTHO05D010165 9.9e-06 53.1 70 45.7
FAN11G1112 Fragaria x ananassa HOM05D015167 ORTHO05D010165 9.9e-06 53.1 60 53.3
FAN16G0587 Fragaria x ananassa HOM05D015167 ORTHO05D010165 9.9e-06 53.1 60 53.3


User provided reference genes

Program Settings