Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 3.7e-188 661.8 413 100.0
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 8.1e-103 378.3 425 60.0
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 4.9e-84 315.8 421 56.5
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.3e-76 291.2 428 53.0
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-76 291.2 428 53.5
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.8e-76 289.7 423 54.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.4e-70 270.4 438 49.3
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.5e-66 256.5 430 50.2
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.5e-66 256.5 430 50.2
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 3.5e-66 256.5 430 50.2
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.3e-60 238.0 189 69.3
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 4.2e-59 233.0 221 57.9
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 6.7e-57 225.7 222 59.0
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.1e-56 224.9 214 59.3
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.3e-55 221.5 339 44.5
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 6.9e-54 215.7 424 46.5
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 4.5e-53 213.0 421 44.9
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 4.5e-53 213.0 414 39.6
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-52 210.7 419 38.4
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.8e-52 209.9 419 38.4
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.5e-51 207.2 420 39.0
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 2.5e-51 207.2 221 51.6
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 3.6e-50 203.4 225 56.0
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 1.8e-49 201.1 206 57.3
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 2.3e-49 200.7 179 64.2
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.7e-47 194.5 222 50.9
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.8e-47 193.7 221 49.3
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 3.7e-47 193.4 437 37.5
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 4.8e-47 193.0 422 38.2
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.1e-46 191.8 220 51.8
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.1e-46 191.8 202 54.0
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.4e-46 191.4 222 47.3
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 2.4e-46 190.7 208 52.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 4.1e-46 189.9 219 52.1
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 9.1e-46 188.7 222 52.7
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 9.1e-46 188.7 416 36.8
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.6e-45 187.2 223 48.4
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.5e-45 186.8 419 40.1
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 5.9e-45 186.0 413 40.9
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 2.2e-44 184.1 211 49.3
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.2e-44 184.1 222 48.6
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 2.2e-44 184.1 219 46.6
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 3.8e-44 183.3 213 47.9
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.1e-43 181.8 221 47.5
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.1e-43 181.8 207 51.2
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.2e-42 178.3 223 45.7
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 1.6e-42 177.9 223 46.6
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.1e-42 177.6 223 46.6
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 3.6e-42 176.8 178 56.2
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 3.6e-42 176.8 220 49.5
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 3.6e-42 176.8 220 46.8
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.4e-41 174.9 421 36.3
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.8e-41 174.5 208 50.5
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 3.0e-41 173.7 171 56.7
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 3.9e-41 173.3 421 43.9
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 6.7e-41 172.6 217 50.7
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 8.8e-41 172.2 221 44.8
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.1e-40 171.8 221 47.5
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 1.1e-40 171.8 435 36.1
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.1e-40 171.8 184 53.3
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 3.3e-40 170.2 419 40.6
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 4.4e-40 169.9 227 50.7
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 4.4e-40 169.9 221 46.6
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 1.3e-39 168.3 222 47.3
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.3e-39 168.3 222 47.7
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 2.8e-39 167.2 217 49.8
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 4.8e-39 166.4 218 48.6
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 4.8e-39 166.4 424 36.6
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 8.2e-39 165.6 425 35.1
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.4e-38 164.9 215 47.9
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.8e-38 164.5 180 53.3
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 2.4e-38 164.1 209 48.3
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 3.1e-38 163.7 215 49.8
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.6e-37 161.4 441 33.3
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.6e-37 160.6 229 47.6
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.0e-36 158.7 185 51.4
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.0e-36 158.7 218 43.6
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.0e-36 158.7 127 66.1
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 1.7e-36 157.9 239 44.8
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 2.2e-36 157.5 211 46.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 3.8e-36 156.8 215 45.6
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 5.0e-36 156.4 179 49.7
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 6.5e-36 156.0 358 36.6
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 6.5e-36 156.0 220 45.0
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 5.5e-35 152.9 222 47.7
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 7.2e-35 152.5 284 37.0
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 2.7e-34 150.6 236 41.1
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.4e-33 148.3 217 43.8
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.5e-32 144.8 149 59.7
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 1.7e-31 141.4 139 57.6
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.7e-31 141.4 217 40.6
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 3.1e-30 137.1 221 43.0
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 4.1e-30 136.7 418 36.8
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.6e-29 134.8 140 51.4
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.7e-28 131.3 419 30.8
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.1e-27 128.6 416 31.0
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.5e-27 128.3 159 43.4
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.5e-27 128.3 189 39.7
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 4.2e-27 126.7 223 39.5
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.2e-26 125.2 182 42.3
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 1.0e-25 122.1 205 39.5
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.8e-25 121.3 212 38.7
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.0e-25 120.6 231 38.1
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.0e-25 120.6 207 40.1
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 4.0e-25 120.2 172 36.6
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 5.2e-25 119.8 207 38.2
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 2.6e-24 117.5 180 36.1
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 2.6e-24 117.5 160 42.5
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 7.5e-24 115.9 204 42.6
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 9.8e-24 115.5 172 37.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 2.8e-23 114.0 331 29.3
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.8e-23 114.0 216 39.4
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 3.7e-23 113.6 320 28.8
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 4.9e-23 113.2 208 40.4
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 4.9e-23 113.2 172 36.6
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.4e-22 111.7 177 42.9
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 2.4e-22 110.9 223 33.6
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 3.1e-22 110.5 115 55.7
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.1e-22 110.5 204 40.7
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.1e-22 110.2 186 42.5
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 5.4e-22 109.8 203 39.4
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 7.0e-22 109.4 203 39.4
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.2e-21 108.6 177 42.9
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 3.5e-21 107.1 157 40.8
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 3.5e-21 107.1 206 36.9
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 1.3e-20 105.1 170 34.7
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 1.3e-20 105.1 207 32.4
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.7e-20 104.8 193 39.4
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 2.9e-20 104.0 193 36.8
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.9e-20 104.0 175 37.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 5.5e-19 99.8 197 35.5
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 7.2e-19 99.4 210 32.4
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.2e-18 98.6 212 37.3
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.1e-18 97.8 224 34.4
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 3.6e-18 97.1 191 36.1
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 3.0e-17 94.0 174 37.4
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 6.8e-17 92.8 171 38.0
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 8.9e-17 92.4 181 34.8
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 8.9e-17 92.4 173 38.2
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.3e-15 88.6 100 54.0
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.4e-14 84.3 188 34.6
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 4.1e-14 83.6 194 33.0
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 4.6e-13 80.1 97 44.3
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.0e-12 79.0 157 33.8
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 1.3e-12 78.6 209 34.0
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.3e-12 77.8 157 32.5
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 2.3e-12 77.8 222 27.9
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 3.9e-12 77.0 216 33.8
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 5.0e-12 76.6 183 35.0
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 8.6e-12 75.9 212 34.4
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 1.9e-11 74.7 215 29.3
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.5e-11 74.3 233 32.2
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 4.3e-11 73.6 223 30.5
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 8.0e-10 69.3 211 28.0
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 3.1e-09 67.4 240 26.7
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 4.0e-09 67.0 235 26.8
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 1.2e-08 65.5 214 30.4
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.0e-08 64.7 204 29.9
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 3.4e-08 63.9 232 29.3
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 7.5e-08 62.8 231 31.2
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 2.2e-07 61.2 227 26.4
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 2.9e-07 60.8 233 24.9
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 1.9e-06 58.2 212 27.8
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 4.1e-06 57.0 214 25.2


User provided reference genes

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