Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 2.9e-128 461.8 225 100.0
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 1.2e-116 423.3 226 91.2
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.5e-113 411.8 225 88.0
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.0e-112 410.2 225 87.1
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 1.7e-112 409.5 227 87.7
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 3.8e-112 408.3 225 87.6
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 8.5e-112 407.1 225 86.7
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 4.7e-110 401.4 225 85.8
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 8.8e-109 397.1 225 84.9
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 1.4e-106 389.8 219 84.5
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 5.4e-106 387.9 225 84.0
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 1.6e-105 386.3 225 83.6
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 1.0e-104 383.6 217 83.9
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 2.3e-104 382.5 225 81.8
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 5.0e-104 381.3 217 83.9
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 6.6e-104 380.9 219 83.6
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 8.6e-104 380.6 211 86.3
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 8.6e-104 380.6 217 83.4
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 1.5e-103 379.8 217 83.4
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 2.5e-103 379.0 217 83.4
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 4.2e-103 378.3 225 81.3
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 9.5e-103 377.1 223 81.2
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 6.1e-102 374.4 223 80.3
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 6.1e-102 374.4 225 80.4
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 8.0e-102 374.0 220 80.5
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.4e-101 373.2 220 81.4
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 6.8e-101 370.9 214 81.3
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 8.9e-101 370.5 246 74.8
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 7.5e-100 367.5 220 79.5
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 2.2e-99 365.9 212 81.6
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 2.2e-99 365.9 220 79.1
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 1.4e-98 363.2 225 80.0
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 2.4e-98 362.5 215 79.1
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 9.2e-98 360.5 213 81.2
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 9.2e-98 360.5 212 78.3
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 1.2e-97 360.1 222 79.7
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 1.6e-97 359.8 212 80.2
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 1.6e-97 359.8 218 80.3
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 2.0e-97 359.4 211 81.5
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 2.7e-97 359.0 219 79.0
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 4.6e-97 358.2 216 78.2
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 5.9e-97 357.8 225 75.1
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 7.8e-97 357.5 215 76.7
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 1.0e-96 357.1 225 76.0
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 1.3e-96 356.7 211 80.1
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 2.3e-96 355.9 225 76.9
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 6.6e-96 354.4 214 78.0
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 8.6e-96 354.0 214 77.6
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 8.6e-96 354.0 225 75.6
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 1.5e-95 353.2 225 74.2
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 1.9e-95 352.8 211 79.1
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 3.3e-95 352.1 219 77.6
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 3.3e-95 352.1 205 79.0
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 9.5e-95 350.5 220 78.2
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 9.5e-95 350.5 212 77.8
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 8.0e-94 347.4 205 79.5
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 1.4e-93 346.7 220 74.1
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 1.8e-93 346.3 210 78.1
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 2.3e-93 345.9 214 77.6
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 5.2e-93 344.7 208 80.3
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 5.2e-93 344.7 223 74.4
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 6.8e-93 344.4 225 71.6
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 8.9e-93 344.0 213 75.6
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 2.0e-92 342.8 219 75.3
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 4.9e-91 338.2 212 75.9
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 2.4e-90 335.9 211 75.8
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 3.2e-90 335.5 178 88.8
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 4.1e-90 335.1 211 75.8
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 5.4e-90 334.7 211 75.8
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 5.4e-90 334.7 211 75.8
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 9.2e-90 334.0 212 71.7
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 2.0e-89 332.8 200 77.5
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 2.7e-89 332.4 211 74.9
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 4.6e-89 331.6 200 77.0
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 2.3e-88 329.3 214 74.8
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 2.3e-88 329.3 214 74.8
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 3.0e-88 328.9 212 74.5
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.1e-87 327.0 201 75.1
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 3.6e-86 322.0 209 70.8
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 6.2e-86 321.2 227 72.2
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 3.4e-84 315.5 178 80.9
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 6.4e-83 311.2 187 73.8
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 1.3e-80 303.5 260 60.4
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 9.5e-79 297.4 165 81.2
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 2.8e-78 295.8 171 81.3
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 4.0e-77 292.0 214 69.6
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 2.0e-76 289.7 179 76.0
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 3.0e-72 275.8 190 68.4
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 2.4e-69 266.2 218 64.7
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 5.2e-69 265.0 152 78.3
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 2.2e-67 259.6 198 59.1
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 5.4e-66 255.0 194 57.7
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 1.9e-63 246.5 140 82.1
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 2.5e-63 246.1 211 59.7
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 2.5e-63 246.1 221 62.0
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 3.4e-60 235.7 215 54.0
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 8.4e-59 231.1 130 83.1
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 2.9e-51 206.1 140 68.6
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 1.5e-47 193.7 115 79.1
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 4.3e-47 192.2 128 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.0e-43 181.0 155 51.6
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 1.8e-40 170.2 103 76.7
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 1.6e-38 163.7 216 37.5
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 9.0e-37 157.9 128 64.1
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 7.6e-36 154.8 128 61.7
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 3.9e-32 142.5 216 31.0
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 2.9e-27 126.3 107 52.3
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 4.2e-26 122.5 172 32.0
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 2.7e-25 119.8 85 67.1
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 5.1e-24 115.5 81 66.7
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 9.7e-23 111.3 75 65.3
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 4.1e-21 105.9 58 72.4
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.3e-19 100.9 64 70.3
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.8e-19 99.4 56 75.0
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 7.2e-18 95.1 71 64.8
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 5.1e-16 89.0 70 68.6
CBR_g50885 Chara braunii HOM05D006727 ORTHO05D008408 8.2e-14 81.6 132 34.1
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 7.7e-12 75.1 58 72.4
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 8.0e-09 65.1 93 46.2


User provided reference genes

Program Settings