Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 4.5e-175 617.8 317 100.0
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 9.5e-117 424.1 316 71.8
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.4e-107 393.7 315 68.6
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 6.8e-107 391.3 315 68.3
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 8.4e-105 384.4 315 67.6
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 4.1e-104 382.1 315 67.3
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 4.1e-104 382.1 315 67.3
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 4.7e-100 368.6 322 61.2
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 5.2e-99 365.2 327 59.6
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 7.6e-98 361.3 322 60.6
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 1.3e-97 360.5 325 58.8
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 1.1e-96 357.5 319 60.2
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 3.6e-92 342.4 327 58.7
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 6.2e-92 341.7 319 59.9
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 5.3e-91 338.6 321 58.3
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 3.8e-89 332.4 315 58.4
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 5.4e-88 328.6 320 58.1
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.1e-87 326.6 319 58.0
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 2.3e-86 323.2 319 57.4
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 3.0e-86 322.8 319 57.4
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 1.1e-85 320.9 331 54.1
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 1.5e-85 320.5 325 56.6
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 9.6e-85 317.8 319 56.1
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 6.2e-84 315.1 325 55.1
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 1.1e-83 314.3 325 54.5
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.8e-83 313.5 316 54.4
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 9.0e-83 311.2 321 53.9
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 1.5e-82 310.5 319 56.4
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 1.5e-82 310.5 331 55.6
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 4.5e-82 308.9 318 54.1
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 4.5e-82 308.9 319 56.4
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 5.8e-82 308.5 320 56.9
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 7.6e-82 308.1 317 54.3
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 9.9e-82 307.8 317 54.6
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 3.8e-81 305.8 318 54.1
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 4.9e-81 305.4 320 55.9
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 6.4e-81 305.1 310 54.2
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 6.4e-81 305.1 332 54.2
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 1.4e-80 303.9 323 55.4
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 1.9e-80 303.5 322 51.9
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 2.4e-80 303.1 323 54.8
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 4.2e-80 302.4 321 52.3
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 5.5e-80 302.0 322 53.4
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 2.1e-79 300.1 317 53.6
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 7.9e-79 298.1 316 53.8
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.8e-78 297.0 320 55.6
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 3.9e-78 295.8 329 52.3
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 6.7e-78 295.0 311 52.1
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 8.7e-78 294.7 317 52.1
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 7.4e-77 291.6 344 51.2
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 9.6e-77 291.2 319 49.8
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 2.1e-76 290.0 300 53.7
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 4.8e-76 288.9 304 51.6
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 4.0e-75 285.8 345 49.9
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 4.0e-75 285.8 308 53.2
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 5.3e-75 285.4 337 50.1
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 9.0e-75 284.6 330 50.9
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 1.2e-74 284.3 322 51.9
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 1.5e-74 283.9 312 51.9
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 4.5e-74 282.3 317 51.1
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 4.9e-73 278.9 318 49.4
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 2.5e-72 276.6 313 51.1
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 5.5e-72 275.4 321 51.1
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 9.3e-72 274.6 321 50.8
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 9.3e-72 274.6 313 51.8
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 1.2e-71 274.2 318 49.4
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 3.5e-71 272.7 322 50.3
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 1.9e-69 266.9 161 85.7
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 4.8e-68 262.3 330 47.9
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 1.4e-67 260.8 320 48.1
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 1.8e-67 260.4 325 48.6
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.5e-66 257.3 312 47.1
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 3.8e-65 252.7 323 44.9
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 6.5e-65 251.9 317 46.1
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 6.5e-65 251.9 300 47.3
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 8.5e-65 251.5 321 51.7
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 1.1e-64 251.1 316 46.2
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 1.9e-64 250.4 326 46.6
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 5.5e-64 248.8 322 47.2
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 1.2e-63 247.7 318 47.8
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.1e-63 246.9 304 46.4
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 3.6e-63 246.1 322 46.0
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 6.1e-63 245.4 314 47.1
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 1.3e-62 244.2 308 45.8
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.5e-61 240.7 317 46.1
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 9.7e-61 238.0 310 45.8
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 1.3e-60 237.7 305 45.6
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 2.4e-59 233.4 313 45.4
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 6.9e-59 231.9 314 45.2
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 2.0e-58 230.3 313 46.0
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 6.5e-57 225.3 335 42.7
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 1.4e-56 224.2 278 48.9
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 1.9e-56 223.8 305 42.6
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 1.2e-55 221.1 319 43.3
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 1.4e-54 217.6 200 58.5
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.1e-51 208.0 312 40.7
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 1.1e-51 208.0 317 42.0
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 4.1e-51 206.1 317 42.6
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 5.3e-51 205.7 305 43.6
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 1.4e-48 197.6 305 41.0
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 3.5e-42 176.4 385 33.2
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 2.1e-39 167.2 346 34.1
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 2.1e-39 167.2 242 42.1
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 8.0e-39 165.2 190 50.5
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 4.8e-36 156.0 300 36.7
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.0e-33 148.3 184 46.7
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 1.3e-33 147.9 197 48.2
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 5.2e-30 136.0 312 32.4
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 8.3e-28 128.6 314 31.5
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 2.9e-25 120.2 385 27.5
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 3.8e-25 119.8 133 48.9
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 5.5e-24 115.9 73 84.9
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 6.1e-23 112.5 97 62.9
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 1.8e-22 110.9 348 29.6
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.8e-19 100.9 309 29.4
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 2.5e-16 90.5 207 31.4
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 4.7e-15 86.3 108 48.1
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 3.5e-10 70.1 126 31.7
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 6.6e-09 65.9 78 43.6
VMungo0647G0753 Vigna mungo HOM05D006207 ORTHO05D007868 2.5e-08 63.9 120 35.8
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 5.2e-06 56.2 65 46.2


User provided reference genes

Program Settings