Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 3.7e-52 208.0 108 100.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 2.3e-30 135.6 107 61.7
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.5e-29 132.9 107 63.6
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 3.3e-29 131.7 107 61.7
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 5.7e-29 131.0 107 60.7
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 9.7e-29 130.2 101 70.3
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.3e-28 129.8 108 63.9
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.7e-28 129.4 108 61.1
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.7e-28 129.4 106 67.0
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 6.3e-28 127.5 107 61.7
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 9.1e-27 123.6 108 60.2
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 9.1e-27 123.6 108 55.6
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 5.9e-26 120.9 108 60.2
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 5.9e-26 120.9 107 57.9
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 1.0e-25 120.2 107 56.1
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 1.3e-25 119.8 107 55.1
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.3e-25 119.8 107 57.0
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.8e-25 118.2 107 58.9
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.8e-25 118.2 107 58.9
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.8e-25 118.2 107 58.9
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 3.8e-25 118.2 105 56.2
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 3.8e-25 118.2 107 56.1
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 3.8e-25 118.2 107 52.3
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 8.5e-25 117.1 108 54.6
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.5e-25 117.1 107 58.9
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 8.5e-25 117.1 107 54.2
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.1e-24 116.7 108 53.7
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.4e-24 116.3 107 57.9
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.4e-24 116.3 108 55.6
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.9e-24 115.9 107 56.1
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 2.5e-24 115.5 107 57.9
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.2e-24 115.2 107 57.0
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 3.2e-24 115.2 108 55.6
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 5.5e-24 114.4 108 54.6
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 7.2e-24 114.0 108 57.4
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 7.2e-24 114.0 107 52.3
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.1e-23 112.5 107 51.4
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 2.1e-23 112.5 108 57.4
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.7e-23 112.1 108 55.6
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 4.7e-23 111.3 114 50.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 6.1e-23 110.9 107 54.2
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 6.1e-23 110.9 108 55.6
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.0e-22 110.2 107 55.1
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.3e-22 109.0 107 54.2
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 2.3e-22 109.0 109 53.2
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.9e-22 108.2 107 46.7
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 5.1e-22 107.8 107 51.4
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.7e-22 107.5 108 53.7
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 8.8e-22 107.1 102 54.9
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 2.6e-21 105.5 107 49.5
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.6e-21 105.5 108 53.7
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.3e-21 105.1 108 53.7
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 4.4e-21 104.8 108 50.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.7e-21 104.4 104 52.9
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 7.4e-21 104.0 107 47.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 7.4e-21 104.0 107 48.6
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 9.7e-21 103.6 99 53.5
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.8e-20 102.1 107 52.3
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 2.8e-20 102.1 105 53.3
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 4.8e-20 101.3 107 52.3
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 6.3e-20 100.9 101 50.5
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 6.3e-20 100.9 107 50.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.8e-19 99.4 107 47.7
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 1.8e-19 99.4 107 48.6
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 3.1e-19 98.6 105 52.4
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 5.3e-19 97.8 108 47.2
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 6.9e-19 97.4 107 46.7
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 1.2e-18 96.7 120 48.3
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.5e-18 96.3 107 44.9
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 3.4e-18 95.1 104 47.1
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 3.4e-18 95.1 107 45.8
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 5.9e-18 94.4 108 44.4
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 1.3e-17 93.2 108 43.5
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.3e-17 93.2 107 44.9
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.7e-17 92.8 106 45.3
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-17 92.8 83 57.8
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-17 92.8 83 57.8
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 5.0e-17 91.3 106 45.3
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 8.5e-17 90.5 107 43.0
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.1e-16 90.1 83 56.6
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 4.2e-16 88.2 109 45.0
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 4.2e-16 88.2 106 45.3
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 1.2e-15 86.7 107 43.9
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.1e-15 85.9 90 52.2
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 2.1e-15 85.9 94 46.8
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 3.6e-15 85.1 96 46.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 4.7e-15 84.7 107 42.1
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 6.1e-15 84.3 85 45.9
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 8.0e-15 84.0 108 41.7
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 2.3e-14 82.4 101 41.6
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 2.3e-14 82.4 101 45.5
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.3e-14 82.4 73 58.9
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 3.0e-14 82.0 99 42.4
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.2e-14 81.3 83 54.2
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 6.7e-14 80.9 92 42.4
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 8.8e-14 80.5 102 46.1
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 8.8e-14 80.5 108 44.4
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.5e-13 79.7 108 39.8
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 2.0e-13 79.3 110 43.6
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 4.4e-13 78.2 93 44.1
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 5.7e-13 77.8 109 43.1
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 7.4e-13 77.4 101 42.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 9.7e-13 77.0 93 44.1
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 9.7e-13 77.0 93 44.1
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 9.7e-13 77.0 109 43.1
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 9.7e-13 77.0 59 57.6
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 1.3e-12 76.6 101 42.6
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 2.8e-12 75.5 93 44.1
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 2.8e-12 75.5 109 42.2
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 3.1e-11 72.0 100 41.0
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 7.0e-11 70.9 99 38.4
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 5.9e-10 67.8 89 42.7
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 1.3e-09 66.6 92 39.1
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 3.8e-09 65.1 74 48.6
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 1.5e-08 63.2 74 48.6
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 1.5e-08 63.2 74 48.6
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.2e-08 62.0 106 36.8
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 9.4e-08 60.5 91 39.6
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.6e-07 59.7 74 47.3
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 2.1e-07 59.3 74 47.3
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 2.7e-07 58.9 85 43.5
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.0e-06 57.0 71 43.7
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.0e-06 57.0 101 26.7
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.0e-06 57.0 106 28.3
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.4e-06 56.6 55 49.1
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.0e-06 55.1 90 34.4
SGA_v2.0_scaffold85G26712 Striga asiatica HOM05D000053 ORTHO05D008490 4.0e-06 55.1 55 47.3


User provided reference genes

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