Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 2.3e-134 482.3 244 100.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.2e-116 423.3 276 79.3
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 3.8e-105 385.2 280 71.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.7e-103 379.0 277 71.1
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-102 375.2 277 70.8
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 6.7e-102 374.4 280 70.0
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 1.9e-101 372.9 277 70.4
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 3.3e-101 372.1 280 70.0
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.6e-101 371.3 280 69.6
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.0e-94 350.5 259 68.7
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 3.9e-94 348.6 278 66.5
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 3.3e-93 345.5 259 68.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 6.2e-92 341.3 272 65.8
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.0e-89 334.0 259 66.0
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 4.2e-88 328.6 254 66.9
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 4.2e-88 328.6 280 61.4
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 4.2e-88 328.6 219 75.8
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.6e-87 326.6 258 65.1
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.1e-87 326.2 278 61.2
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.7e-87 325.9 257 64.2
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 7.9e-87 324.3 259 64.1
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.8e-86 323.2 273 61.5
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.9e-86 322.0 254 65.0
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.7e-86 320.9 253 65.2
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 8.7e-86 320.9 268 62.3
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.5e-85 320.1 272 61.0
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.5e-85 320.1 275 61.1
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.5e-85 319.3 254 64.6
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.5e-85 319.3 255 63.9
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 4.3e-85 318.5 274 61.3
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 5.7e-85 318.2 274 60.9
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 5.7e-85 318.2 205 75.6
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.4e-85 317.8 253 64.8
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 7.4e-85 317.8 275 59.6
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 9.7e-85 317.4 277 59.9
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.3e-84 317.0 275 59.6
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 6.3e-84 314.7 251 62.9
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 8.2e-84 314.3 245 65.3
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.1e-83 313.9 273 60.8
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 1.4e-83 313.5 248 65.7
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 3.1e-83 312.4 253 63.2
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.2e-82 310.5 250 63.2
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 4.5e-82 308.5 261 62.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 7.6e-82 307.8 269 59.9
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.7e-81 306.6 242 65.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.9e-81 305.8 251 62.2
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 5.0e-81 305.1 252 63.9
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 8.5e-81 304.3 250 60.4
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 2.5e-80 302.8 251 61.0
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 3.2e-80 302.4 252 59.9
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 4.2e-80 302.0 254 62.6
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.6e-79 300.1 252 60.7
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.7e-79 299.3 203 70.4
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 6.1e-79 298.1 273 58.2
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 7.9e-79 297.7 251 61.8
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.4e-78 297.0 303 54.1
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 3.0e-78 295.8 274 56.2
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.0e-78 295.8 259 57.9
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.9e-78 295.4 274 56.2
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.9e-78 295.4 274 56.2
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 5.1e-78 295.0 276 55.1
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 5.1e-78 295.0 254 62.2
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 4.3e-77 292.0 253 60.1
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 4.3e-77 292.0 276 55.4
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 4.3e-77 292.0 276 55.4
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 4.3e-77 292.0 286 55.2
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 4.3e-77 292.0 277 57.4
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 9.7e-77 290.8 264 59.5
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 2.2e-76 289.7 266 56.8
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 2.8e-76 289.3 290 54.8
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.7e-76 288.9 254 61.0
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.4e-75 287.0 248 58.1
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 6.9e-75 284.6 248 60.9
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 9.1e-75 284.3 254 57.9
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 9.1e-75 284.3 254 57.9
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 2.0e-74 283.1 249 58.6
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.0e-73 280.8 268 54.5
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.3e-73 280.4 292 56.2
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.2e-73 279.6 249 57.4
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 5.0e-73 278.5 259 57.1
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 5.5e-72 275.0 271 54.2
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 9.4e-72 274.2 247 57.5
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 2.7e-71 272.7 261 56.3
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 6.1e-71 271.6 272 54.8
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.5e-69 266.9 256 55.9
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 4.8e-68 261.9 269 53.2
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 4.1e-67 258.8 203 62.1
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 9.1e-67 257.7 251 53.0
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.9e-65 252.7 249 51.4
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.4e-64 250.4 273 51.6
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.7e-63 246.1 301 48.8
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 6.1e-63 245.0 272 50.0
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 8.0e-63 244.6 283 50.5
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 1.0e-62 244.2 205 62.9
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 6.7e-62 241.5 261 52.1
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 4.8e-60 235.3 275 47.6
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.1e-59 232.3 226 55.8
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 7.0e-59 231.5 166 67.5
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 7.7e-58 228.0 272 48.9
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 1.9e-56 223.4 192 60.9
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 9.4e-56 221.1 275 48.7
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 4.0e-54 215.7 265 46.4
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.2e-53 214.2 156 66.0
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 3.5e-50 202.6 194 55.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.0e-49 201.1 250 45.6
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 1.3e-49 200.7 244 48.8
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.7e-49 200.3 169 59.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.9e-49 199.5 172 61.0
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.5e-49 198.4 271 43.2
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 7.2e-48 194.9 159 65.4
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 6.1e-47 191.8 258 40.7
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 1.4e-46 190.7 197 50.3
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.1e-40 171.0 292 38.7
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 5.5e-40 168.7 173 53.2
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 1.5e-37 160.6 101 79.2
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.2e-34 151.0 208 42.8
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.5e-34 149.1 118 63.6
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.3e-33 147.5 141 51.8
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 8.9e-30 134.8 76 81.6
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.5e-29 134.0 110 60.9
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 3.9e-25 119.4 205 37.1
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 1.5e-24 117.5 84 72.6
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 5.6e-24 115.5 74 81.1
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 5.2e-22 109.0 84 58.3
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-15 87.0 58 75.9
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 1.1e-14 84.7 58 77.6
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.8e-14 84.0 109 45.0
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 3.1e-14 83.2 66 62.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 3.7e-12 76.3 38 84.2
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 3.2e-11 73.2 48 68.8
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 7.1e-11 72.0 215 29.3
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-10 70.5 36 88.9
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 2.1e-10 70.5 36 88.9
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-07 60.1 42 69.0


User provided reference genes

Program Settings