Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G271900 Prunus persica HOM05D004233 ORTHO05D003507 2.5e-66 255.4 135 100.0
MD12G1161500 Malus domestica HOM05D004233 ORTHO05D003507 1.3e-51 206.5 130 81.5
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 1.3e-43 179.9 133 77.4
FvH4_6g11920 Fragaria vesca HOM05D004233 ORTHO05D003507 3.9e-43 178.3 140 72.9
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 3.9e-43 178.3 140 72.9
FAN14G3430 Fragaria x ananassa HOM05D004233 ORTHO05D003507 3.9e-43 178.3 140 72.9
FAN14G4547 Fragaria x ananassa HOM05D004233 ORTHO05D003507 3.9e-43 178.3 140 72.9
FAN05G3657 Fragaria x ananassa HOM05D004233 ORTHO05D003507 5.1e-43 177.9 140 72.9
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.9e-42 176.0 140 71.4
Cfa017246 Carpinus fangiana HOM05D004233 ORTHO05D003507 1.1e-37 160.2 136 67.6
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 1.3e-35 153.3 134 64.2
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 3.9e-35 151.8 135 63.7
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 1.7e-30 136.3 135 59.3
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 2.2e-30 136.0 135 59.3
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 2.2e-30 136.0 133 57.9
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 4.9e-30 134.8 135 58.5
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 8.4e-30 134.0 133 57.9
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 1.4e-29 133.3 137 57.7
ClCG10G021920 Citrullus lanatus HOM05D004233 ORTHO05D003507 4.2e-29 131.7 133 56.4
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 7.1e-29 131.0 135 57.8
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 7.1e-29 131.0 135 57.8
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 2.7e-28 129.0 132 54.5
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 3.5e-28 128.6 140 56.4
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.5e-28 128.6 135 57.0
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 6.0e-28 127.9 132 57.6
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 6.0e-28 127.9 132 58.3
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 1.3e-27 126.7 132 56.1
MELO3C009185.2 Cucumis melo HOM05D004233 ORTHO05D003507 5.1e-27 124.8 135 54.1
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 1.5e-26 123.2 133 51.1
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 1.5e-26 123.2 133 54.9
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 1.9e-26 122.9 119 57.1
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 4.3e-26 121.7 135 50.4
Sed0021305 Sechium edule HOM05D004233 ORTHO05D003507 5.6e-26 121.3 134 53.7
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 7.3e-26 120.9 133 50.4
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 3.6e-25 118.6 133 54.9
Sed0017480 Sechium edule HOM05D004233 ORTHO05D003507 8.1e-25 117.5 130 53.8
Eucgr.K02995 Eucalyptus grandis HOM05D004233 ORTHO05D003507 1.1e-24 117.1 132 54.5
Glyma.01G113100 Glycine max HOM05D004233 ORTHO05D003507 1.4e-24 116.7 133 48.1
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.4e-24 116.7 133 51.9
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 1.8e-24 116.3 135 54.1
CsaV3_3G034080 Cucumis sativus L. HOM05D004233 ORTHO05D003507 4.5e-23 111.7 133 49.6
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 5.8e-23 111.3 136 51.5
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 7.6e-23 110.9 134 53.0
Phvul.008G106800 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 1.3e-22 110.2 130 53.1
VMungo1383G3137 Vigna mungo HOM05D004233 ORTHO05D003507 6.4e-22 107.8 138 51.4
Glyma.07G146500 Glycine max HOM05D004233 ORTHO05D003507 1.4e-21 106.7 129 55.0
Glyma.18G197700 Glycine max HOM05D004233 ORTHO05D003507 5.4e-21 104.8 129 52.7
Oeu030524.1 Olea europaea HOM05D004233 ORTHO05D003507 2.1e-20 102.8 131 51.1
CANSAT35G0502 Cannabis sativa HOM05D004233 ORTHO05D003507 3.5e-20 102.1 157 48.4
Glyma.15G073400 Glycine max HOM05D004233 ORTHO05D003507 4.6e-20 101.7 124 52.4
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.0e-19 100.5 133 48.1
Glyma.13G239800 Glycine max HOM05D004233 ORTHO05D003507 2.3e-19 99.4 124 54.0
Phvul.006G186000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 3.0e-19 99.0 129 50.4
Medtr7g067365 Medicago truncatula HOM05D004233 ORTHO05D003507 5.1e-19 98.2 120 48.3
Atru.chr8.2208 Acer truncatum HOM05D004233 ORTHO05D003507 8.7e-19 97.4 102 55.9
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 2.5e-18 95.9 133 43.6
PGR004G1616 Punica granatum HOM05D004233 ORTHO05D003507 4.3e-18 95.1 140 47.1
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 7.4e-18 94.4 123 54.5
Oeu024626.1 Olea europaea HOM05D004233 ORTHO05D003507 1.6e-17 93.2 131 48.1
TPR.G1552 Trifolium pratense HOM05D004233 ORTHO05D003507 2.1e-17 92.8 125 47.2
THA.LOC104823286 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 3.6e-17 92.0 146 47.3
Medtr2g013470 Medicago truncatula HOM05D004233 ORTHO05D003507 6.2e-17 91.3 129 45.7
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 8.1e-17 90.9 135 45.2
Psat3g130680 Pisum sativum HOM05D004233 ORTHO05D003507 3.1e-16 89.0 122 46.7
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 9.0e-16 87.4 132 49.2
Lalb_Chr15g0089821 Lupinus albus HOM05D004233 ORTHO05D003507 1.2e-15 87.0 122 44.3
TPR.G29052 Trifolium pratense HOM05D004233 ORTHO05D003507 1.5e-15 86.7 124 48.4
Ca_00329_v3 Cicer arietinum L. HOM05D004233 ORTHO05D003507 2.0e-15 86.3 119 45.4
Gohir.D01G215600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.0e-15 86.3 79 62.0
Gorai.002G261800 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.0e-15 86.3 79 62.0
Gohir.A01G225900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.6e-15 85.9 79 62.0
CARHR211560 Cardamine hirsuta HOM05D004233 ORTHO05D003507 3.4e-15 85.5 146 42.5
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 7.6e-15 84.3 134 46.3
Gohir.D04G129214 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.3e-14 83.6 116 49.1
Gorai.012G112300 Gossypium raimondii HOM05D004233 ORTHO05D003507 1.3e-14 83.6 116 49.1
Oeu055173.1 Olea europaea HOM05D004233 ORTHO05D003507 1.3e-14 83.6 119 46.2
Lalb_Chr13g0291241 Lupinus albus HOM05D004233 ORTHO05D003507 1.7e-14 83.2 110 45.5
Lalb_Chr03g0043081 Lupinus albus HOM05D004233 ORTHO05D003507 2.2e-14 82.8 125 46.4
BcaNung07269 Brassica carinata HOM05D004233 ORTHO05D003507 3.8e-14 82.0 156 40.4
Lj6g0009965 Lotus japonicus HOM05D004233 ORTHO05D003507 3.8e-14 82.0 117 45.3
CARHR083380 Cardamine hirsuta HOM05D004233 ORTHO05D003507 4.9e-14 81.6 146 41.8
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 8.4e-14 80.9 135 39.3
Gohir.A04G088850 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.1e-13 80.5 116 48.3
PSO339G4028 Papaver somniferum HOM05D004233 ORTHO05D003507 1.1e-13 80.5 151 39.1
A10p33670 Brassica napus HOM05D004233 ORTHO05D003507 1.4e-13 80.1 154 37.7
Thhalv10014915m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 1.9e-13 79.7 161 41.0
BraA10t45398Z Brassica rapa HOM05D004233 ORTHO05D003507 2.4e-13 79.3 156 37.2
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 5.5e-13 78.2 133 39.1
arahy.Tifrunner.gnm1.ann1.BL7XQ3 Arachis hypogaea HOM05D004233 ORTHO05D003507 1.2e-12 77.0 118 43.2
THA.LOC104816214 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.6e-12 76.6 146 43.8
THA.LOC104827043 Tarenaya hassleriana HOM05D004233 ORTHO05D003507 1.6e-12 76.6 143 46.9
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 2.7e-12 75.9 111 46.8
Sp6g40580 Schrenkiella parvula HOM05D004233 ORTHO05D003507 2.7e-12 75.9 154 37.7
AT5G01225 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 4.6e-12 75.1 141 42.6
Carub.0003s0817 Capsella rubella HOM05D004233 ORTHO05D003507 4.6e-12 75.1 145 40.7
AL3G20070 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 6.0e-12 74.7 146 41.1
AL6G10960 Arabidopsis lyrata HOM05D004233 ORTHO05D003507 7.9e-12 74.3 158 38.6
BcaNung06802 Brassica carinata HOM05D004233 ORTHO05D003507 1.0e-11 73.9 157 38.9
BolC9t60190H Brassica oleracea HOM05D004233 ORTHO05D003507 1.0e-11 73.9 157 38.9
DCAR_018722 Daucus carota HOM05D004233 ORTHO05D003507 1.8e-11 73.2 132 40.2
BcaC06g31968 Brassica carinata HOM05D004233 ORTHO05D003507 2.3e-11 72.8 162 37.0
PSO384G2407 Papaver somniferum HOM05D004233 ORTHO05D003507 3.0e-11 72.4 153 35.9
DCAR_015449 Daucus carota HOM05D004233 ORTHO05D003507 3.9e-11 72.0 129 43.4
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 3.9e-11 72.0 133 39.1
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 3.9e-11 72.0 134 38.1
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 6.7e-11 71.2 108 46.3
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 6.7e-11 71.2 129 45.0
Sp3g07460 Schrenkiella parvula HOM05D004233 ORTHO05D003507 6.7e-11 71.2 144 38.9
CANSAT54G0898 Cannabis sativa HOM05D004233 ORTHO05D003507 8.7e-11 70.9 130 36.9
C09p74580 Brassica napus HOM05D004233 ORTHO05D003507 1.1e-10 70.5 155 36.8
AT3G09032 Arabidopsis thaliana HOM05D004233 ORTHO05D003507 1.5e-10 70.1 148 37.2
A05p39820 Brassica napus HOM05D004233 ORTHO05D003507 1.5e-10 70.1 143 41.3
BraA05t22766Z Brassica rapa HOM05D004233 ORTHO05D003507 1.5e-10 70.1 143 41.3
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.5e-10 69.3 88 44.3
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 3.3e-10 68.9 75 53.3
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.3e-10 68.9 88 44.3
ClCG04G007170 Citrullus lanatus HOM05D004233 ORTHO05D003507 5.6e-10 68.2 122 44.3
SalBow4G0303 Salvia bowleyana HOM05D004233 ORTHO05D003507 5.6e-10 68.2 75 58.7
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 9.6e-10 67.4 118 44.1
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 9.6e-10 67.4 74 50.0
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 9.6e-10 67.4 106 45.3
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.3e-09 67.0 88 43.2
C05p58860 Brassica napus HOM05D004233 ORTHO05D003507 1.6e-09 66.6 143 39.9
BolC5t34538H Brassica oleracea HOM05D004233 ORTHO05D003507 1.6e-09 66.6 143 39.9
Thhalv10022307m.g Eutrema salsugineum HOM05D004233 ORTHO05D003507 1.6e-09 66.6 146 38.4
Prupe.6G060400 Prunus persica HOM05D012510 ORTHO05D015115 2.1e-09 66.2 135 37.8
BcaC05g29637 Brassica carinata HOM05D004233 ORTHO05D003507 2.8e-09 65.9 143 39.9
SalBow4G1886 Salvia bowleyana HOM05D004233 ORTHO05D003507 2.8e-09 65.9 69 58.0
Nitab4.5_0000102g0150 Nicotiana tabacum HOM05D004233 ORTHO05D003507 3.7e-09 65.5 136 36.8
Migut.L01999 Erythranthe guttata HOM05D004233 ORTHO05D003507 4.8e-09 65.1 141 39.0
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 6.2e-09 64.7 103 38.8
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.2e-09 64.3 119 36.1
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 8.2e-09 64.3 115 43.5
DCAR_024028 Daucus carota HOM05D004233 ORTHO05D003507 1.4e-08 63.5 62 58.1
DCAR_028820 Daucus carota HOM05D004233 ORTHO05D003507 1.4e-08 63.5 96 43.8
Carub.0006s0066 Capsella rubella HOM05D004233 ORTHO05D003507 1.8e-08 63.2 155 38.1
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.1e-08 62.4 78 47.4
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.1e-08 62.4 78 47.4
Sopen09g007170 Solanum pennellii HOM05D004233 ORTHO05D003507 5.3e-08 61.6 137 36.5
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 6.9e-08 61.2 104 40.4
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 1.2e-07 60.5 134 39.6
MELO3C003231.2 Cucumis melo HOM05D004233 ORTHO05D003507 1.2e-07 60.5 135 40.7
Phvul.008G262500 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 1.5e-07 60.1 123 37.4
BolC1t05478H Brassica oleracea HOM05D004233 ORTHO05D003507 2.6e-07 59.3 144 35.4
CAN.G780.3 Capsicum annuum HOM05D004233 ORTHO05D003507 3.4e-07 58.9 116 33.6
BraA01t04320Z Brassica rapa HOM05D004233 ORTHO05D003507 4.5e-07 58.5 144 35.4
BcaC09g48049 Brassica carinata HOM05D004233 ORTHO05D003507 5.8e-07 58.2 148 35.1
CsaV3_4G026060 Cucumis sativus L. HOM05D004233 ORTHO05D003507 5.8e-07 58.2 133 38.3
Nn2g11404 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.0e-06 57.4 133 35.3
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 1.3e-06 57.0 111 43.2
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 1.3e-06 57.0 111 43.2
Glyma.02G225600 Glycine max HOM05D010371 ORTHO05D003507 1.3e-06 57.0 123 35.8
PGSC0003DMG400004152 Solanum tuberosum HOM05D004233 ORTHO05D003507 1.3e-06 57.0 77 41.6
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 1.3e-06 57.0 74 48.6
Solyc06g006090.1 Solanum lycopersicum HOM05D004233 ORTHO05D003507 2.2e-06 56.2 77 40.3
Sopen06g002040 Solanum pennellii HOM05D004233 ORTHO05D003507 2.9e-06 55.8 76 40.8
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 3.8e-06 55.5 114 38.6
Oeu045519.1 Olea europaea HOM05D004233 ORTHO05D003507 3.8e-06 55.5 115 38.3
Sed0015935 Sechium edule HOM05D004233 ORTHO05D003507 3.8e-06 55.5 128 36.7
TPR.G24023 Trifolium pratense HOM05D010371 ORTHO05D003507 3.8e-06 55.5 119 37.0
BcaC09g48004 Brassica carinata HOM05D004233 ORTHO05D003507 4.9e-06 55.1 145 33.8
Glyma.18G065800 Glycine max HOM05D010371 ORTHO05D003507 4.9e-06 55.1 96 40.6
VMungo0647G2148 Vigna mungo HOM05D010371 ORTHO05D003507 6.5e-06 54.7 123 34.1
Glyma.14G192400 Glycine max HOM05D010371 ORTHO05D003507 8.4e-06 54.3 122 38.5


User provided reference genes

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