Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 1.1e-270 936.0 474 100.0
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 1.6e-221 772.7 476 82.6
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.4e-217 759.6 470 82.3
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 9.9e-211 736.9 482 79.5
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 4.3e-206 721.5 482 78.2
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.3e-206 721.5 482 78.2
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 4.3e-206 721.5 482 78.2
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.1e-205 719.2 482 78.0
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.6e-203 712.2 482 77.4
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.2e-197 691.0 451 79.2
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.9e-185 652.9 484 70.0
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.8e-180 636.3 483 68.3
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 5.3e-180 634.8 485 69.7
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 7.4e-174 614.4 481 68.4
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 3.2e-169 599.0 486 66.9
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 3.6e-168 595.5 480 67.9
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.3e-167 592.8 488 64.5
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 5.2e-167 591.7 486 66.3
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 8.2e-165 584.3 487 66.1
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.5e-163 578.9 486 65.6
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 2.9e-162 575.9 485 66.6
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 1.5e-161 573.5 484 64.7
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.9e-161 573.2 482 63.5
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 2.5e-161 572.8 485 63.5
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.2e-160 570.5 482 64.9
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.0e-159 567.4 483 64.2
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 9.7e-158 560.8 506 61.9
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 2.8e-157 559.3 486 63.6
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 7.7e-155 551.2 446 65.9
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.1e-153 547.4 470 66.2
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 1.6e-152 543.5 486 62.6
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.6e-152 542.3 487 61.2
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.4e-151 540.4 485 59.2
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.0e-151 539.3 487 61.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 5.2e-151 538.5 488 64.8
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 8.8e-151 537.7 485 61.9
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 7.5e-150 534.6 484 63.0
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.8e-149 532.7 479 59.9
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 2.3e-146 523.1 483 61.1
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 1.9e-145 520.0 489 59.3
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.8e-143 513.5 494 58.9
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 2.0e-142 510.0 423 63.8
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 7.5e-142 508.1 504 59.5
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 7.0e-140 501.5 487 57.9
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 3.5e-139 499.2 476 59.5
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 7.3e-137 491.5 491 56.4
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.4e-135 487.3 479 57.0
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 4.0e-135 485.7 479 57.8
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.2e-131 474.2 511 56.4
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 2.7e-131 473.0 498 55.6
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 3.5e-131 472.6 481 57.4
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.0e-130 471.1 568 52.6
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 6.6e-130 468.4 382 64.7
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 2.5e-129 466.5 478 55.4
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 5.6e-129 465.3 377 64.7
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 3.1e-127 459.5 476 55.5
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 4.0e-127 459.1 476 56.3
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.2e-127 458.8 388 63.4
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 9.8e-126 454.5 479 56.4
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 8.3e-125 451.4 490 53.5
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 2.4e-124 449.9 491 52.3
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 4.1e-124 449.1 407 60.4
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 7.0e-124 448.4 390 61.5
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 2.7e-123 446.4 480 55.4
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 2.3e-122 443.4 500 53.4
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 2.3e-122 443.4 480 56.0
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 3.9e-122 442.6 520 52.1
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 3.9e-122 442.6 483 54.7
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.2e-120 437.6 382 62.0
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 8.9e-119 431.4 482 55.4
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 2.0e-118 430.3 476 54.2
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 2.0e-118 430.3 390 60.8
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 2.9e-117 426.4 408 57.8
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 1.1e-116 424.5 478 54.2
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.4e-116 424.1 481 52.8
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.3e-114 416.8 483 50.3
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 4.3e-113 412.5 488 51.0
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 4.7e-112 409.1 403 58.8
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 2.4e-111 406.8 388 59.5
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.2e-110 404.4 483 50.7
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.4e-108 396.7 388 56.7
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 2.5e-105 386.7 427 55.0
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 5.6e-105 385.6 473 49.0
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.8e-104 383.3 373 60.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 2.4e-103 380.2 444 50.9
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 4.0e-103 379.4 412 53.9
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.2e-102 377.9 382 56.3
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 2.2e-101 373.6 453 50.8
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.2e-100 369.8 368 60.1
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 2.7e-99 366.7 497 46.9
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 9.6e-97 358.2 405 52.6
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 2.1e-96 357.1 409 52.1
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 4.0e-95 352.8 369 54.7
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 7.6e-94 348.6 374 54.5
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 4.6e-91 339.3 380 53.7
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 1.3e-90 337.8 316 58.5
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.8e-90 337.4 412 51.5
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 2.3e-90 337.0 382 53.1
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 2.5e-89 333.6 390 52.6
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 7.4e-89 332.0 439 46.7
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.3e-88 331.3 455 45.5
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 9.9e-86 321.6 398 50.0
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.3e-85 321.2 398 50.0
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 1.3e-85 321.2 379 51.7
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 6.4e-85 318.9 451 43.2
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.4e-84 317.8 399 51.1
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 3.2e-84 316.6 418 46.4
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.9e-81 307.4 397 50.4
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.3e-81 306.2 373 50.7
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.2e-78 298.1 403 48.1
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 2.6e-78 297.0 448 44.2
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.7e-77 294.3 451 43.7
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 3.8e-77 293.1 451 44.6
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 4.9e-77 292.7 385 50.1
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 3.7e-72 276.6 363 48.5
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 3.2e-68 263.5 472 42.4
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 7.9e-67 258.8 452 39.8
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 8.8e-66 255.4 347 45.2
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.1e-65 255.0 334 48.2
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 4.8e-64 249.6 379 44.1
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.5e-60 237.3 226 54.0
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.8e-58 231.1 261 51.0
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 8.8e-50 202.2 204 51.5
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 2.4e-47 194.1 222 48.2
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 9.1e-47 192.2 357 38.9
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 6.1e-43 179.5 108 81.5
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 7.2e-36 156.0 308 38.3
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 2.3e-34 151.0 152 46.1
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.1e-31 142.1 262 36.3
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.1e-31 140.2 238 37.0
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.0e-29 135.6 161 51.6
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 8.6e-29 132.5 229 39.7
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.1e-28 132.1 163 40.5
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 6.1e-27 126.3 367 31.3
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.4e-26 125.2 242 40.5
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 8.3e-24 115.9 106 46.2
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 7.0e-23 112.8 116 54.3
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 4.7e-19 100.1 68 70.6
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 8.0e-11 72.8 52 76.9
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 7.0e-07 59.7 94 38.3


User provided reference genes

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