Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G268700 Prunus persica HOM05D004100 ORTHO05D004781 2.0e-36 155.2 77 100.0
MD12G1158300 Malus domestica HOM05D004100 ORTHO05D004781 1.5e-31 139.0 78 85.9
MD04G1144200 Malus domestica HOM05D004100 ORTHO05D004781 1.9e-31 138.7 78 84.6
Prupe.6G268600 Prunus persica HOM05D004100 ORTHO05D004781 6.5e-27 123.6 76 78.9
Gohir.D04G127700 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-26 122.9 77 72.7
Duzib128G0469 Durio zibethinus HOM05D004100 ORTHO05D004781 1.9e-26 122.1 78 75.6
Ciclev10013247m.g Citrus clementina HOM05D004100 ORTHO05D004781 7.1e-26 120.2 78 71.8
Gorai.012G110700 Gossypium raimondii HOM05D004100 ORTHO05D004781 2.7e-25 118.2 78 71.8
PSO384G2084 Papaver somniferum HOM05D004100 ORTHO05D004781 3.5e-25 117.9 78 73.1
PSO585G0025 Papaver somniferum HOM05D004100 ORTHO05D004781 3.5e-25 117.9 78 73.1
CANSAT35G1936 Cannabis sativa HOM05D004100 ORTHO05D004781 6.0e-25 117.1 79 69.6
Duzib093G2045 Durio zibethinus HOM05D004100 ORTHO05D004781 1.3e-24 115.9 78 71.8
Manes.08G084000 Manihot esculenta HOM05D004100 ORTHO05D004781 1.3e-24 115.9 78 70.5
Thecc.05G024300 Theobroma cacao HOM05D004100 ORTHO05D004781 1.3e-24 115.9 78 73.1
Cfa017271 Carpinus fangiana HOM05D004100 ORTHO05D004781 3.0e-24 114.8 78 71.8
TAR623G1136 Trochodendron aralioides HOM05D004100 ORTHO05D004781 3.0e-24 114.8 78 71.8
FvH4_6g12280 Fragaria vesca HOM05D004100 ORTHO05D004781 3.9e-24 114.4 78 67.9
TWI63G1110 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 5.1e-24 114.0 78 70.5
CiPaw.09G204500 Carya illinoinensis HOM05D004100 ORTHO05D004781 6.7e-24 113.6 78 71.8
FAN09G3480 Fragaria x ananassa HOM05D004100 ORTHO05D004781 6.7e-24 113.6 77 67.5
THA.LOC104805700 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 6.7e-24 113.6 78 69.2
TAR369G1064 Trochodendron aralioides HOM05D004100 ORTHO05D004781 6.7e-24 113.6 78 70.5
QL07p036366 Quercus lobata HOM05D004100 ORTHO05D004781 1.9e-23 112.1 77 70.1
TWI74G1404 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 1.9e-23 112.1 78 69.2
Atru.chr8.2126 Acer truncatum HOM05D004100 ORTHO05D004781 2.5e-23 111.7 78 70.5
CiPaw.10G153500 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.5e-23 111.7 78 65.4
Sabra16G0106200 Salix brachista HOM05D004100 ORTHO05D004781 2.5e-23 111.7 78 67.9
TWI53G1956 Tripterygium wilfordii HOM05D004100 ORTHO05D004781 3.3e-23 111.3 78 67.9
RcHm_v2.0_Chr3g0464081 Rosa chinensis HOM05D004100 ORTHO05D004781 4.3e-23 110.9 78 65.4
Os09g0326850 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 5.7e-23 110.5 79 67.1
Potri.010G194400 Populus trichocarpa HOM05D004100 ORTHO05D004781 7.4e-23 110.2 78 69.2
CiPaw.02G189000 Carya illinoinensis HOM05D004100 ORTHO05D004781 9.6e-23 109.8 78 69.2
Eucgr.G03237 Eucalyptus grandis HOM05D004100 ORTHO05D004781 9.6e-23 109.8 78 66.7
Potri.008G063000 Populus trichocarpa HOM05D004100 ORTHO05D004781 9.6e-23 109.8 78 67.9
Aqoxy2G00841 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 2.1e-22 108.6 77 64.9
BcaB01g03736 Brassica carinata HOM05D000076 ORTHO05D001377 2.1e-22 108.6 79 63.3
BolC3t14861H Brassica oleracea HOM05D000076 ORTHO05D001377 2.1e-22 108.6 79 63.3
BraA03t11338Z Brassica rapa HOM05D000076 ORTHO05D001377 2.1e-22 108.6 79 63.3
CiPaw.01G294400 Carya illinoinensis HOM05D004100 ORTHO05D004781 2.1e-22 108.6 78 67.9
RcHm_v2.0_Chr1g0369131 Rosa chinensis HOM05D004100 ORTHO05D004781 2.1e-22 108.6 78 69.2
Sp4g20290 Schrenkiella parvula HOM05D004100 ORTHO05D004781 2.1e-22 108.6 79 63.3
Ciclev10010082m.g Citrus clementina HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 67.9
FvH4_7g23790 Fragaria vesca HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 69.2
Glyma.01G109600 Glycine max HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 66.7
Glyma.03G074700 Glycine max HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 66.7
Lalb_Chr18g0052831 Lupinus albus HOM05D004100 ORTHO05D004781 2.8e-22 108.2 78 67.9
Nn6g33749 Nelumbo nucifera HOM05D004100 ORTHO05D004781 2.8e-22 108.2 75 68.0
Aa31sc250G10 Aethionema arabicum HOM05D004100 ORTHO05D004781 3.7e-22 107.8 79 63.3
Ca_05921_v3 Cicer arietinum L. HOM05D004100 ORTHO05D004781 3.7e-22 107.8 78 69.2
ClCG10G021700 Citrullus lanatus HOM05D004100 ORTHO05D004781 4.8e-22 107.5 78 65.4
Thecc.10G028200 Theobroma cacao HOM05D004100 ORTHO05D004781 4.8e-22 107.5 78 65.4
Carub.0004s1994 Capsella rubella HOM05D004100 ORTHO05D004781 6.3e-22 107.1 79 63.3
CARHR132530 Cardamine hirsuta HOM05D004100 ORTHO05D004781 6.3e-22 107.1 79 63.3
Duzib114G0906 Durio zibethinus HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 65.4
Eucgr.E00256 Eucalyptus grandis HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 66.7
Thhalv10017760m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 6.3e-22 107.1 79 63.3
Glyma.11G226100 Glycine max HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 67.9
Manes.10G019000 Manihot esculenta HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 64.1
PGR044G2436 Punica granatum HOM05D004100 ORTHO05D004781 6.3e-22 107.1 78 65.4
A04p29120 Brassica napus HOM05D004100 ORTHO05D004781 8.2e-22 106.7 79 62.0
BolC4t28139H Brassica oleracea HOM05D000076 ORTHO05D001377 8.2e-22 106.7 79 62.0
BraA04t18382Z Brassica rapa HOM05D000076 ORTHO05D001377 8.2e-22 106.7 79 62.0
Carub.0005s2067 Capsella rubella HOM05D004100 ORTHO05D004781 8.2e-22 106.7 79 63.3
COL.COLO4_25607 Corchorus olitorius HOM05D004100 ORTHO05D004781 8.2e-22 106.7 79 64.6
Lalb_Chr15g0084391 Lupinus albus HOM05D004100 ORTHO05D004781 8.2e-22 106.7 78 66.7
PGR031G0718 Punica granatum HOM05D004100 ORTHO05D004781 8.2e-22 106.7 78 65.4
Migut.F01567 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.1e-21 106.3 79 63.3
Gohir.A05G346300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-21 106.3 78 66.7
Gohir.D04G065900 Gossypium hirsutum HOM05D004100 ORTHO05D004781 1.1e-21 106.3 78 65.4
Gorai.012G074300 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.1e-21 106.3 78 65.4
Potri.016G109500 Populus trichocarpa HOM05D004100 ORTHO05D004781 1.1e-21 106.3 75 65.3
Aqoxy6G01946 Aquilegia oxysepala HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 64.1
BcaB02g09230 Brassica carinata HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 62.0
BraA05t19768Z Brassica rapa HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 62.0
CARHR150630 Cardamine hirsuta HOM05D004100 ORTHO05D004781 1.4e-21 105.9 79 65.8
Glyma.18G031200 Glycine max HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 66.7
Nn2g11332 Nelumbo nucifera HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 65.4
Sc11g0006410 Simmondsia chinensis HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 66.7
GSVIVG01013495001 Vitis vinifera HOM05D004100 ORTHO05D004781 1.4e-21 105.9 78 64.1
Phvul.008G227500 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 1.8e-21 105.5 78 66.7
Sed0020785 Sechium edule HOM05D004100 ORTHO05D004781 1.8e-21 105.5 78 66.7
AL4G34950 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 2.4e-21 105.1 79 62.0
AT2G37975 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 2.4e-21 105.1 79 62.0
Gohir.D13G018200 Gossypium hirsutum HOM05D004100 ORTHO05D004781 2.4e-21 105.1 78 66.7
TPR.G8216 Trifolium pratense HOM05D004100 ORTHO05D004781 2.4e-21 105.1 78 65.4
GSVIVG01016389001 Vitis vinifera HOM05D004100 ORTHO05D004781 2.4e-21 105.1 78 64.1
Gohir.A04G087300 Gossypium hirsutum HOM05D004100 ORTHO05D004781 3.1e-21 104.8 76 64.5
Phvul.010G006600 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 3.1e-21 104.8 78 65.4
A09p47070 Brassica napus HOM05D004100 ORTHO05D004781 4.1e-21 104.4 79 62.0
Glyma.02G253300 Glycine max HOM05D004100 ORTHO05D004781 4.1e-21 104.4 78 66.7
Aa31sc516G30 Aethionema arabicum HOM05D004100 ORTHO05D004781 5.3e-21 104.0 79 60.8
arahy.Tifrunner.gnm1.ann1.YUBK9J Arachis hypogaea HOM05D004100 ORTHO05D004781 5.3e-21 104.0 78 65.4
Lalb_Chr04g0250821 Lupinus albus HOM05D004100 ORTHO05D004781 5.3e-21 104.0 78 62.8
Medtr4g019160 Medicago truncatula HOM05D004100 ORTHO05D004781 5.3e-21 104.0 78 65.4
THA.LOC104816861 Tarenaya hassleriana HOM05D004100 ORTHO05D004781 5.3e-21 104.0 78 59.0
AL5G35090 Arabidopsis lyrata HOM05D004100 ORTHO05D004781 6.9e-21 103.6 79 65.8
MELO3C009201.2 Cucumis melo HOM05D004100 ORTHO05D004781 6.9e-21 103.6 78 64.1
Glyma.14G063100 Glycine max HOM05D004100 ORTHO05D004781 6.9e-21 103.6 78 65.4
Gohir.A13G017100 Gossypium hirsutum HOM05D004100 ORTHO05D004781 6.9e-21 103.6 78 65.4
Prupe.2G244600 Prunus persica HOM05D004100 ORTHO05D004781 6.9e-21 103.6 78 65.4
Sabra10G0149500 Salix brachista HOM05D004100 ORTHO05D004781 6.9e-21 103.6 78 65.4
Medtr5g081650 Medicago truncatula HOM05D004100 ORTHO05D004781 9.0e-21 103.2 78 66.7
arahy.Tifrunner.gnm1.ann1.0J6FIX Arachis hypogaea HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 66.7
arahy.Tifrunner.gnm1.ann1.7Y0XMR Arachis hypogaea HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 66.7
TPR.G8047 Trifolium pratense HOM05D004100 ORTHO05D004781 1.2e-20 102.8 78 65.4
MSTRG.234 Avicennia marina HOM05D004100 ORTHO05D004781 1.5e-20 102.4 78 62.8
Gorai.013G020200 Gossypium raimondii HOM05D004100 ORTHO05D004781 1.5e-20 102.4 78 65.4
unitig_0.g234 Utricularia gibba HOM05D004100 ORTHO05D004781 1.5e-20 102.4 78 61.5
CSS0011416 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.0e-20 102.1 78 62.8
CARHR163970 Cardamine hirsuta HOM05D004100 ORTHO05D004781 2.0e-20 102.1 79 62.0
CSS0039007 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 2.6e-20 101.7 77 62.3
Manes.07G124300 Manihot esculenta HOM05D004100 ORTHO05D004781 2.6e-20 101.7 78 62.8
Phvul.001G239400 Phaseolus vulgaris HOM05D004100 ORTHO05D004781 2.6e-20 101.7 78 62.8
Sed0001470 Sechium edule HOM05D004100 ORTHO05D004781 2.6e-20 101.7 78 65.4
CSS0037675 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 3.4e-20 101.3 74 64.9
Oeu055822.1 Olea europaea HOM05D004100 ORTHO05D004781 3.4e-20 101.3 78 64.1
SalBow1G1269 Salvia bowleyana HOM05D004100 ORTHO05D004781 3.4e-20 101.3 78 62.8
AT3G54085 Arabidopsis thaliana HOM05D004100 ORTHO05D004781 4.5e-20 100.9 79 64.6
C08p29320 Brassica napus HOM05D004100 ORTHO05D004781 4.5e-20 100.9 79 59.5
Psat2g035960 Pisum sativum HOM05D004100 ORTHO05D004781 4.5e-20 100.9 78 65.4
Thhalv10010931m.g Eutrema salsugineum HOM05D004100 ORTHO05D004781 5.9e-20 100.5 79 59.5
Nn2g13575 Nelumbo nucifera HOM05D004100 ORTHO05D004781 5.9e-20 100.5 76 61.8
Psat7g242160 Pisum sativum HOM05D004100 ORTHO05D004781 5.9e-20 100.5 76 64.5
vmacro10075 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 5.9e-20 100.5 78 61.5
Sed0017691 Sechium edule HOM05D004100 ORTHO05D004781 7.6e-20 100.1 78 64.1
vmacro16617 Vaccinium macrocarpon HOM05D004100 ORTHO05D004781 7.6e-20 100.1 78 61.5
Duzib128G1203 Durio zibethinus HOM05D004100 ORTHO05D004781 1.0e-19 99.8 78 61.5
Migut.I01038 Erythranthe guttata HOM05D004100 ORTHO05D004781 1.0e-19 99.8 78 61.5
Actinidia07713 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.7e-19 99.0 78 61.5
Actinidia13907 Actinidia chinensis HOM05D004100 ORTHO05D004781 1.7e-19 99.0 78 61.5
ECA238G3287 Erigeron canadensis HOM05D004100 ORTHO05D004781 1.7e-19 99.0 78 62.8
Ah.10g030410 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.2e-19 98.6 78 61.5
Hma1.2p1_0026F.1_g016830 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 2.2e-19 98.6 78 60.3
CDE05G3529 Ceratophyllum demersum HOM05D004100 ORTHO05D004781 2.9e-19 98.2 78 62.8
Rhsim09G0171200 Rhododendron simsii HOM05D004100 ORTHO05D004781 2.9e-19 98.2 78 57.7
DCAR_027562 Daucus carota HOM05D004100 ORTHO05D004781 3.8e-19 97.8 78 62.8
Hma1.2p1_0026F.1_g016860 Hydrangea macrophylla HOM05D004100 ORTHO05D004781 3.8e-19 97.8 78 59.0
Os03g0331900 Oryza sativa ssp. japonica HOM05D004100 ORTHO05D004781 3.8e-19 97.8 79 57.0
arahy.Tifrunner.gnm1.ann1.97IM7W Arachis hypogaea HOM05D004100 ORTHO05D004781 6.5e-19 97.1 77 63.6
CSS0048931 Camellia sinensis var. sinensis HOM05D004100 ORTHO05D004781 6.5e-19 97.1 78 60.3
HanXRQChr07g0202251 Helianthus annuus HOM05D004100 ORTHO05D004781 8.5e-19 96.7 78 61.5
Lj6g0000528 Lotus japonicus HOM05D004100 ORTHO05D004781 1.1e-18 96.3 78 59.0
SalBow6G6247 Salvia bowleyana HOM05D004100 ORTHO05D004781 2.5e-18 95.1 74 60.8
Cc02_g07040 Coffea canephora HOM05D004100 ORTHO05D004781 3.2e-18 94.7 78 59.0
Solyc08g082695.1 Solanum lycopersicum HOM05D004100 ORTHO05D004781 3.2e-18 94.7 78 59.0
Sopen08g030920 Solanum pennellii HOM05D004100 ORTHO05D004781 3.2e-18 94.7 78 59.0
ClCG11G006500 Citrullus lanatus HOM05D004100 ORTHO05D004781 5.5e-18 94.0 73 64.4
Lsat_1_v5_gn_1_35860 Lactuca sativa HOM05D004100 ORTHO05D004781 5.5e-18 94.0 75 62.7
Rhsim03G0139100 Rhododendron simsii HOM05D004100 ORTHO05D004781 9.3e-18 93.2 78 56.4
CAN.G567.29 Capsicum annuum HOM05D004100 ORTHO05D004781 1.2e-17 92.8 78 57.7
Sed0010532 Sechium edule HOM05D004100 ORTHO05D004781 2.1e-17 92.0 78 59.0
Ah.02g116480 Amaranthus hybridus HOM05D004100 ORTHO05D004781 2.7e-17 91.7 77 57.1
CAN.G689.7 Capsicum annuum HOM05D004100 ORTHO05D004781 2.7e-17 91.7 78 55.1
BcaNung06516 Brassica carinata HOM05D004100 ORTHO05D004781 3.6e-17 91.3 77 58.4
Ah.12g057400 Amaranthus hybridus HOM05D004100 ORTHO05D004781 3.0e-16 88.2 77 54.5
Mapoly0015s0116 Marchantia polymorpha HOM05D004100 ORTHO05D004781 6.7e-16 87.0 78 51.3
Atru.chr8.2168 Acer truncatum HOM05D004100 ORTHO05D004781 8.7e-16 86.7 61 70.5
AUR62013833 Chenopodium quinoa HOM05D004100 ORTHO05D004781 1.9e-15 85.5 71 59.2
SMO117G0142 Selaginella moellendorffii HOM05D004100 ORTHO05D004781 3.3e-15 84.7 76 55.3
HPP92_003287 Vanilla planifolia HOM05D004100 ORTHO05D004781 1.6e-14 82.4 63 63.5
Pp3c5_27310 Physcomitrium patens HOM05D004100 ORTHO05D004781 3.7e-14 81.3 78 52.6
FAN01G2433 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.8e-14 80.9 56 67.9
FAN03G0295 Fragaria x ananassa HOM05D004100 ORTHO05D004781 4.8e-14 80.9 64 64.1
Pp3c6_2550 Physcomitrium patens HOM05D004100 ORTHO05D004781 2.4e-13 78.6 78 51.3
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 2.0e-12 75.5 54 66.7
arahy.Tifrunner.gnm1.ann1.0IJH0T Arachis hypogaea HOM05D004100 ORTHO05D087279 8.5e-11 70.1 49 67.3
MCO12G437 Micromonas commoda HOM05D004100 ORTHO05D004781 1.9e-10 68.9 80 46.2
AUR62037182 Chenopodium quinoa HOM05D004100 ORTHO05D004781 7.2e-10 67.0 72 54.2
Cre06.g299750 Chlamydomonas reinhardtii HOM05D004100 ORTHO05D004781 9.4e-10 66.6 77 49.4
BcaC02g11939 Brassica carinata HOM05D004100 ORTHO05D004781 4.6e-09 64.3 43 67.4
arahy.Tifrunner.gnm1.ann1.R21D2Y Arachis hypogaea HOM05D004100 ORTHO05D004781 2.3e-08 62.0 57 52.6
PRCOL_00003613 Prasinoderma coloniale HOM05D004100 ORTHO05D004781 5.1e-08 60.8 80 45.0
Actinidia27826 Actinidia chinensis HOM05D004100 ORTHO05D004781 6.7e-08 60.5 38 68.4
LjContig00141g0009471 Lotus japonicus HOM05D004100 ORTHO05D004781 8.8e-08 60.1 60 46.7
FAN06G1577 Fragaria x ananassa HOM05D004100 ORTHO05D004781 1.5e-07 59.3 41 68.3
FAN06G2089 Fragaria x ananassa HOM05D004100 ORTHO05D004781 7.4e-07 57.0 40 67.5


User provided reference genes

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