Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.8e-40 168.7 80 100.0
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 3.9e-27 124.4 81 72.8
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 3.3e-26 121.3 78 76.9
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.0e-23 112.1 72 70.8
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.9e-23 110.5 72 69.4
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 7.7e-23 110.2 72 69.4
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.0e-22 109.8 72 69.4
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.7e-22 109.0 72 68.1
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.0e-22 107.5 72 66.7
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.5e-22 107.1 80 65.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 2.5e-21 105.1 72 66.7
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 5.5e-21 104.0 80 53.8
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 7.2e-21 103.6 80 55.0
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 3.6e-20 101.3 77 54.5
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 4.7e-20 100.9 77 57.1
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 7.9e-20 100.1 79 51.9
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 7.9e-20 100.1 76 57.9
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 3.9e-19 97.8 78 53.8
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 3.9e-19 97.8 81 55.6
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 6.7e-19 97.1 78 51.3
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 8.8e-19 96.7 78 57.7
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 8.8e-19 96.7 78 57.7
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.8e-19 96.7 72 58.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 8.8e-19 96.7 72 58.3
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-18 96.3 72 58.3
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.1e-18 96.3 76 55.3
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 2.6e-18 95.1 75 61.3
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 2.6e-18 95.1 80 50.0
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.3e-18 94.7 81 58.0
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 7.4e-18 93.6 79 57.0
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.7e-18 93.2 81 58.0
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.3e-17 92.8 82 57.3
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.3e-17 92.8 77 53.2
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.8e-17 91.7 73 56.2
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.8e-16 89.0 73 54.8
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 2.4e-16 88.6 73 52.1
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 4.1e-16 87.8 70 52.9
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 4.1e-16 87.8 74 56.8
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.1e-16 87.8 72 52.8
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 9.1e-16 86.7 60 56.7
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 9.1e-16 86.7 60 56.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.2e-15 86.3 78 47.4
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.2e-15 86.3 80 50.0
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.5e-15 84.7 77 53.2
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.5e-15 84.3 74 55.4
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.5e-15 84.3 73 50.7
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.0e-14 83.2 68 48.5
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.0e-14 83.2 68 48.5
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.0e-14 83.2 82 51.2
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.3e-14 82.8 76 53.9
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.3e-14 82.8 76 53.9
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.3e-14 82.8 72 58.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.2e-14 82.0 66 53.0
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.9e-14 81.6 69 53.6
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 3.8e-14 81.3 74 43.2
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.5e-14 80.5 77 46.8
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 8.5e-14 80.1 75 53.3
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 8.5e-14 80.1 76 51.3
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 8.5e-14 80.1 66 51.5
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 8.5e-14 80.1 78 48.7
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.1e-13 79.7 80 47.5
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 1.9e-13 79.0 79 45.6
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.9e-13 79.0 83 50.6
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 5.5e-13 77.4 82 45.1
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 7.2e-13 77.0 81 44.4
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.2e-13 77.0 80 43.8
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 9.4e-13 76.6 85 44.7
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 9.4e-13 76.6 79 44.3
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 1.2e-12 76.3 69 47.8
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.2e-12 76.3 79 49.4
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 1.6e-12 75.9 71 46.5
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.1e-12 75.5 81 46.9
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 2.1e-12 75.5 82 48.8
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 4.7e-12 74.3 72 55.6
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.8e-11 72.4 51 49.0
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 1.8e-11 72.4 74 45.9
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.8e-11 72.4 71 47.9
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.8e-11 72.4 77 45.5
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.3e-11 72.0 82 43.9
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 8.8e-11 70.1 84 44.0
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 8.8e-11 70.1 82 43.9
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.5e-10 69.3 78 42.3
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.0e-10 68.9 80 46.2
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 2.6e-10 68.6 76 48.7
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 4.4e-10 67.8 74 47.3
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 4.4e-10 67.8 82 40.2
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 5.7e-10 67.4 78 41.0
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.7e-10 67.4 69 46.4
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 7.5e-10 67.0 81 42.0
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 9.7e-10 66.6 66 47.0
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 9.7e-10 66.6 65 49.2
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 1.3e-09 66.2 67 43.3
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.7e-09 65.9 74 43.2
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.7e-09 65.9 112 36.6
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 1.7e-09 65.9 70 44.3
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 2.8e-09 65.1 56 51.8
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 2.8e-09 65.1 63 52.4
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 3.7e-09 64.7 99 35.4
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 3.7e-09 64.7 81 44.4
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.8e-09 64.3 79 38.0
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.8e-09 64.3 69 43.5
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 8.2e-09 63.5 76 43.4
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.2e-09 63.5 40 60.0
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 1.8e-08 62.4 62 45.2
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 2.4e-08 62.0 80 38.8
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 2.4e-08 62.0 78 41.0
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 4.1e-08 61.2 80 40.0
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.2e-07 59.7 71 40.8
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 2.7e-07 58.5 41 51.2
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 3.5e-07 58.2 81 39.5
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 2.2e-06 55.5 78 39.7
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 6.5e-06 53.9 77 40.3
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 6.5e-06 53.9 77 40.3


User provided reference genes

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