Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.6e-164 582.8 308 100.0
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.4e-117 426.0 317 76.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 1.9e-114 416.4 318 74.8
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.4e-112 410.2 318 69.2
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 1.3e-110 403.7 319 68.0
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 7.8e-108 394.4 317 69.4
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 2.5e-106 389.4 313 66.1
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 7.3e-106 387.9 320 65.9
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 9.6e-106 387.5 348 63.5
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.3e-105 387.1 348 63.5
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-105 387.1 313 70.0
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.6e-105 385.6 313 69.6
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.1e-105 384.4 313 69.3
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 3.1e-104 382.5 319 67.4
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.3e-102 377.1 318 64.2
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.3e-102 377.1 318 64.2
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.4e-101 373.6 312 67.3
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.4e-101 372.9 319 63.6
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.2e-100 370.5 318 63.5
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.1e-97 359.8 319 62.4
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 3.1e-96 355.9 319 62.7
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.2e-95 354.0 313 63.9
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 3.4e-95 352.4 321 62.0
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.2e-94 349.7 335 59.1
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.2e-94 349.7 335 59.1
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.2e-94 349.7 319 61.8
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 3.8e-94 349.0 335 59.1
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 6.4e-94 348.2 332 62.0
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.1e-93 347.4 322 59.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.4e-93 347.1 320 62.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.4e-93 347.1 332 62.3
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 9.3e-93 344.4 318 59.1
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 1.2e-92 344.0 327 61.2
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.2e-92 344.0 315 61.0
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 6.0e-92 341.7 316 62.0
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 6.0e-92 341.7 325 60.6
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.0e-91 340.9 313 62.6
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 3.0e-91 339.3 317 59.0
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.5e-90 337.0 315 60.3
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 3.7e-89 332.4 321 59.5
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 4.8e-89 332.0 321 59.8
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 6.2e-89 331.6 321 60.1
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 6.2e-89 331.6 313 60.7
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 8.2e-89 331.3 328 58.5
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 5.3e-88 328.6 321 57.0
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.6e-87 326.2 321 57.3
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.6e-87 326.2 318 57.9
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.0e-86 324.3 322 56.8
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 2.2e-86 323.2 322 59.0
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.9e-86 322.8 319 55.5
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 4.9e-86 322.0 314 58.9
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 4.9e-86 322.0 323 59.1
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 8.4e-86 321.2 320 57.2
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.1e-85 320.9 324 58.0
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.9e-85 320.1 316 59.5
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.9e-85 320.1 321 57.9
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 2.5e-85 319.7 320 57.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 2.5e-85 319.7 320 57.8
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 5.5e-85 318.5 290 61.4
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.2e-84 317.4 313 57.2
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.0e-83 314.3 316 56.6
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.3e-83 313.9 319 55.5
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.8e-83 313.5 309 56.6
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.3e-83 313.2 318 60.1
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 1.5e-82 310.5 255 65.9
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.5e-82 309.7 318 55.0
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 7.4e-82 308.1 322 56.5
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.6e-81 307.0 318 54.4
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.8e-81 306.2 339 56.6
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 6.3e-81 305.1 321 56.1
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 8.2e-81 304.7 319 54.5
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 6.9e-80 301.6 322 55.3
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.2e-79 300.8 319 58.0
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 2.0e-79 300.1 323 54.8
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.9e-79 298.5 257 66.5
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.3e-78 297.4 315 55.6
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.7e-78 297.0 328 54.3
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.1e-77 294.3 328 54.9
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.9e-77 293.5 297 58.6
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 4.2e-77 292.4 313 51.8
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.4e-77 291.2 347 51.0
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 2.3e-75 286.6 311 53.7
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 5.1e-75 285.4 338 52.7
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.5e-74 283.9 315 57.1
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.5e-74 283.9 317 56.8
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.3e-74 282.3 346 50.6
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 7.4e-74 281.6 351 49.3
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.3e-70 270.8 325 51.7
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.2e-69 266.2 322 54.0
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 7.2e-69 265.0 322 53.1
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.2e-68 264.2 319 51.4
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 2.7e-68 263.1 321 53.3
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 3.6e-68 262.7 321 53.3
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 6.1e-68 261.9 335 50.7
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 7.9e-68 261.5 320 52.5
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 2.3e-67 260.0 321 53.0
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 2.3e-67 260.0 321 53.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 2.6e-66 256.5 311 49.8
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 1.7e-62 243.8 318 50.9
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.1e-61 241.1 317 46.4
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.1e-61 241.1 230 58.7
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 5.5e-61 238.8 317 45.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.7e-60 236.5 549 34.4
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 8.8e-59 231.5 306 48.4
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 5.7e-58 228.8 312 47.4
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 7.4e-58 228.4 310 50.0
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 3.1e-56 223.0 295 49.5
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.7e-52 209.1 145 72.4
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.8e-51 207.2 316 42.7
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 8.8e-51 204.9 225 59.6
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 2.6e-50 203.4 320 45.0
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 9.7e-50 201.4 277 47.3
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 3.1e-48 196.4 205 55.6
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 3.1e-48 196.4 309 41.7
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 7.0e-48 195.3 296 47.6
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 8.5e-46 188.3 165 64.2
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.4e-43 181.0 320 43.1
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-42 177.9 247 50.2
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-42 176.4 307 43.0
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 2.4e-40 170.2 176 55.1
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 4.1e-40 169.5 196 56.1
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.6e-38 161.8 177 52.5
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.1e-37 161.4 317 39.1
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.3e-37 159.8 148 60.8
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.7e-36 156.0 164 51.8
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 4.7e-36 156.0 298 39.3
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 1.0e-35 154.8 115 66.1
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 1.0e-35 154.8 356 37.4
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.0e-35 152.9 177 50.8
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 8.9e-35 151.8 115 66.1
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 8.9e-35 151.8 115 65.2
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-32 144.8 103 70.9
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 4.1e-32 142.9 159 47.8
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 4.1e-32 142.9 158 49.4
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 5.4e-32 142.5 291 41.9
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.2e-31 141.4 193 45.6
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.6e-31 141.0 291 41.6
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 2.0e-31 140.6 291 41.6
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 5.9e-31 139.0 303 36.6
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.9e-30 136.7 252 43.7
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 4.0e-27 126.3 173 45.7
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-26 124.4 145 52.4
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.0e-26 124.0 173 45.1
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 5.4e-24 115.9 136 52.2
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 8.6e-22 108.6 136 50.7
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.1e-21 108.2 141 51.1
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.7e-15 87.0 101 50.5
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.3e-14 84.0 155 40.0
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.9e-13 80.9 71 59.2
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.5e-13 80.5 52 76.9
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 8.1e-12 75.5 183 37.7
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-11 75.1 55 63.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 1.2e-10 71.6 90 47.8
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 2.0e-10 70.9 56 57.1
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.4e-08 62.8 38 81.6
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 1.2e-07 61.6 157 30.6
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 2.1e-07 60.8 57 57.9


User provided reference genes

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