Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 4.1e-44 181.0 93 100.0
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.9e-28 129.0 95 75.8
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 2.8e-24 115.2 93 68.8
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.3e-23 112.1 93 67.7
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.3e-23 112.1 93 68.8
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.2e-22 109.8 95 62.1
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 2.0e-22 109.0 96 69.8
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 9.9e-22 106.7 86 64.0
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 4.9e-21 104.4 91 62.6
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 8.4e-21 103.6 88 64.8
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 8.4e-21 103.6 88 64.8
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 4.1e-20 101.3 94 58.5
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 7.1e-20 100.5 90 66.7
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 9.2e-20 100.1 84 65.5
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 1.6e-19 99.4 94 59.6
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.1e-19 99.0 96 58.3
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 2.7e-19 98.6 89 62.9
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 4.6e-19 97.8 86 61.6
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.3e-18 95.5 94 57.4
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.0e-18 95.1 101 60.4
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 3.0e-18 95.1 85 61.2
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 3.0e-18 95.1 93 58.1
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 3.0e-18 95.1 89 62.9
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 5.1e-18 94.4 93 61.3
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 8.6e-18 93.6 71 69.0
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.1e-17 93.2 90 56.7
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.3e-17 91.7 88 55.7
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 2.8e-16 88.6 89 57.3
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.8e-16 88.6 85 60.0
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.6e-16 88.2 106 56.6
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 8.1e-16 87.0 88 62.5
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.1e-16 87.0 93 61.3
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.8e-15 85.9 91 54.9
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 5.2e-15 84.3 90 54.4
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 5.2e-15 84.3 89 57.3
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 6.8e-15 84.0 95 52.6
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 6.8e-15 84.0 92 56.5
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 1.2e-14 83.2 93 58.1
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.5e-14 82.8 88 53.4
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 1.5e-14 82.8 89 58.4
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.6e-14 82.0 85 56.5
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.6e-14 82.0 97 53.6
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 3.4e-14 81.6 86 58.1
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 5.8e-14 80.9 95 56.8
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 7.6e-14 80.5 90 54.4
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 7.6e-14 80.5 81 61.7
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 7.6e-14 80.5 81 61.7
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 9.9e-14 80.1 85 56.5
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 1.7e-13 79.3 88 60.2
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 2.9e-13 78.6 85 51.8
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.4e-13 77.0 81 59.3
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.1e-12 76.6 77 54.5
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.4e-12 76.3 85 50.6
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.9e-12 75.9 85 52.9
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.9e-12 75.9 83 54.2
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.2e-12 75.1 89 53.9
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 3.2e-12 75.1 84 53.6
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 7.1e-12 73.9 99 51.5
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.2e-11 73.2 77 51.9
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 2.7e-11 72.0 85 55.3
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 2.7e-11 72.0 77 51.9
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 3.5e-11 71.6 85 52.9
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 6.0e-11 70.9 97 48.5
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.7e-10 69.3 85 51.8
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 1.7e-10 69.3 95 50.5
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.3e-10 68.9 98 43.9
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 3.9e-10 68.2 84 52.4
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 3.9e-10 68.2 85 49.4
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 3.9e-10 68.2 98 49.0
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 5.1e-10 67.8 84 52.4
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 5.1e-10 67.8 98 46.9
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 6.6e-10 67.4 88 50.0
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 6.6e-10 67.4 84 53.6
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.1e-09 66.6 85 50.6
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 2.5e-09 65.5 94 45.7
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 4.3e-09 64.7 84 45.2
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 5.6e-09 64.3 91 38.5
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.6e-08 62.8 84 54.8
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 3.6e-08 61.6 98 39.8
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 3.6e-08 61.6 56 60.7
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 6.2e-08 60.8 92 40.2
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 6.2e-08 60.8 98 44.9
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 6.2e-08 60.8 56 53.6
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 8.1e-08 60.5 89 38.2
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 8.1e-08 60.5 93 43.0
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.1e-07 60.1 92 39.1
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 1.4e-07 59.7 94 41.5
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 1.4e-07 59.7 84 42.9
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 1.4e-07 59.7 84 44.0
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 2.4e-07 58.9 92 38.0
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 2.4e-07 58.9 92 38.0
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 4.0e-07 58.2 86 45.3
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 4.0e-07 58.2 63 50.8
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 5.3e-07 57.8 93 40.9
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 6.9e-07 57.4 85 45.9
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 6.9e-07 57.4 73 43.8
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 1.5e-06 56.2 92 39.1
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.0e-06 55.8 47 55.3
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 2.6e-06 55.5 92 39.1
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 2.6e-06 55.5 85 42.4
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 3.4e-06 55.1 89 44.9
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 3.4e-06 55.1 90 35.6
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 3.4e-06 55.1 69 47.8
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 4.4e-06 54.7 89 39.3
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 4.4e-06 54.7 73 47.9
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 4.4e-06 54.7 72 48.6
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 7.6e-06 53.9 93 45.2
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 7.6e-06 53.9 96 38.5
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 7.6e-06 53.9 96 38.5
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 7.6e-06 53.9 88 38.6
SHI12715 Sapria himalayana HOM05D007574 ORTHO05D007552 7.6e-06 53.9 52 46.2
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 9.9e-06 53.5 49 53.1


User provided reference genes

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