Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 8.4e-125 450.3 215 100.0
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 2.2e-117 425.6 215 94.4
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 1.1e-116 423.3 215 94.0
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 3.0e-114 415.2 215 90.7
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.1e-113 413.3 215 90.7
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.7e-113 411.0 215 90.2
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 9.6e-113 410.2 215 90.7
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.3e-112 409.8 215 91.2
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.3e-112 409.8 216 90.7
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.3e-112 409.8 213 90.1
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.8e-112 408.7 215 89.8
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 2.8e-112 408.7 214 89.3
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 2.8e-112 408.7 214 89.3
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 1.1e-111 406.8 215 90.2
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.8e-111 406.0 215 89.8
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 2.4e-111 405.6 215 88.8
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 2.4e-111 405.6 216 90.3
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.1e-111 405.2 219 88.6
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 4.1e-111 404.8 216 89.8
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 6.9e-111 404.1 215 89.3
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 9.0e-111 403.7 215 88.8
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 9.0e-111 403.7 216 90.7
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.2e-110 403.3 216 89.4
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.4e-110 401.7 215 87.9
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 4.5e-110 401.4 235 83.0
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 4.5e-110 401.4 216 89.8
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.9e-110 401.0 216 88.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 5.9e-110 401.0 215 88.8
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.0e-109 400.2 216 89.8
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.3e-109 399.8 215 87.9
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 2.2e-109 399.1 215 88.4
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 2.2e-109 399.1 215 86.5
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 2.9e-109 398.7 219 88.1
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 2.9e-109 398.7 216 89.4
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.1e-108 396.7 216 89.4
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 3.2e-108 395.2 215 86.0
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 4.2e-108 394.8 216 88.4
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 4.2e-108 394.8 217 86.6
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 4.2e-108 394.8 215 86.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 5.5e-108 394.4 216 86.6
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 7.2e-108 394.0 217 85.7
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.2e-107 393.3 215 86.0
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.2e-107 393.3 215 87.9
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.2e-107 393.3 217 85.7
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 1.6e-107 392.9 215 86.0
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.6e-107 392.9 215 87.4
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 2.7e-107 392.1 216 88.4
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 2.7e-107 392.1 216 88.4
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 2.7e-107 392.1 231 82.7
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 1.3e-106 389.8 216 88.0
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 2.3e-106 389.0 218 85.8
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 2.3e-106 389.0 215 87.0
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 5.1e-106 387.9 215 84.2
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 5.1e-106 387.9 217 85.3
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 5.1e-106 387.9 217 85.3
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 6.7e-106 387.5 200 92.0
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 6.7e-106 387.5 210 85.7
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.5e-105 386.3 215 86.0
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.5e-105 386.3 216 86.1
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.2e-104 382.5 225 83.1
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 8.2e-104 380.6 216 85.6
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.4e-103 379.8 248 76.2
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 1.4e-103 379.8 217 83.4
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 3.1e-103 378.6 215 82.3
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.2e-102 376.7 200 87.0
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 2.0e-102 375.9 215 83.3
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 3.4e-102 375.2 216 81.9
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 82.4
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.3e-101 373.2 216 82.4
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.3e-101 373.2 216 81.9
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.7e-101 372.9 216 81.5
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.7e-101 372.9 198 90.4
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 2.9e-101 372.1 216 81.5
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 2.9e-101 372.1 216 81.5
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 5.0e-101 371.3 216 81.5
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 5.0e-101 371.3 215 84.2
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 8.5e-101 370.5 190 91.6
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.4e-100 369.8 216 81.0
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 2.5e-100 369.0 241 75.9
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 5.5e-100 367.9 220 81.8
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 7.2e-100 367.5 196 89.8
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 3.6e-99 365.2 186 91.4
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 6.1e-99 364.4 219 77.6
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 2.3e-98 362.5 217 80.6
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.3e-98 362.5 216 79.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 5.1e-98 361.3 190 90.5
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 2.0e-97 359.4 188 88.8
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 2.5e-97 359.0 188 90.4
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 4.3e-97 358.2 219 76.3
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 9.7e-97 357.1 178 92.1
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 9.7e-97 357.1 180 91.7
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 4.8e-96 354.8 203 82.3
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 6.3e-96 354.4 190 89.5
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.8e-95 352.8 203 82.3
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.8e-95 352.8 186 88.7
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.5e-94 349.7 203 81.3
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.5e-94 349.7 189 88.4
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.0e-94 349.4 199 81.4
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 2.2e-88 329.3 207 75.4
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 6.3e-88 327.8 192 80.2
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 7.0e-87 324.3 196 73.0
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 1.6e-83 313.2 196 70.4
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 5.2e-82 308.1 215 65.6
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.8e-80 302.4 196 69.4
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.7e-75 285.8 172 79.7
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.7e-75 285.8 172 79.7
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 3.6e-75 285.4 145 91.7
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 8.8e-74 280.8 199 65.3
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 8.3e-72 274.2 145 85.5
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 7.7e-70 267.7 133 92.5
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.2e-67 260.4 133 91.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 5.7e-65 251.5 133 87.2
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.9e-60 236.5 121 88.4
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.9e-60 236.5 130 82.3
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-58 230.3 124 87.1
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 2.3e-58 229.6 144 77.1
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.0e-49 199.9 106 88.7
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-40 170.6 89 91.0
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.4e-39 167.2 97 82.5
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 8.9e-34 147.9 82 85.4
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 1.2e-33 147.5 86 82.6
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.5e-25 120.6 208 34.6
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 9.3e-23 111.3 206 34.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 2.1e-14 83.6 64 65.6
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 7.9e-14 81.6 41 90.2
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 2.8e-11 73.2 64 59.4
MD12G1146300 Malus domestica HOM05D000026 ORTHO05D000094 4.9e-08 62.4 75 49.3
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 8.4e-08 61.6 39 64.1


User provided reference genes

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