Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 4.2e-57 224.6 120 100.0
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 4.1e-44 181.4 121 82.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.7e-43 177.2 121 80.2
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.9e-42 175.3 121 78.5
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.9e-42 175.3 121 78.5
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 6.5e-42 174.1 120 80.8
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.1e-40 169.1 121 78.5
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.7e-40 168.7 120 79.2
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 7.9e-40 167.2 120 75.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.5e-38 162.9 120 74.2
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 3.3e-38 161.8 120 70.8
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 4.8e-37 157.9 118 70.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 4.8e-37 157.9 120 68.3
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 3.5e-35 151.8 113 70.8
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 3.5e-35 151.8 116 70.7
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.2e-34 149.1 120 70.8
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.2e-34 149.1 120 69.2
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.5e-34 147.5 120 68.3
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 6.5e-34 147.5 120 69.2
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 8.5e-34 147.1 119 66.4
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.5e-34 147.1 120 68.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 8.5e-34 147.1 120 65.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.4e-33 146.4 122 70.5
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-33 146.4 119 68.9
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-33 146.4 119 68.9
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.9e-33 146.0 114 70.2
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 2.5e-33 145.6 122 72.1
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.5e-33 145.6 117 66.7
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.5e-33 145.6 122 68.0
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.2e-33 144.8 120 68.3
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 4.2e-33 144.8 120 66.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 7.2e-33 144.1 120 67.5
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 9.4e-33 143.7 120 67.5
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-32 143.3 125 65.6
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.1e-32 142.5 120 67.5
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 2.1e-32 142.5 120 70.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.6e-32 141.7 123 67.5
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 3.6e-32 141.7 120 67.5
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 3.6e-32 141.7 121 64.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.7e-32 141.4 119 65.5
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.7e-32 141.4 120 67.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.4e-31 139.8 120 65.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.8e-31 139.4 117 61.5
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.3e-31 139.0 82 85.4
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.3e-31 139.0 119 64.7
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 3.9e-31 138.3 121 62.8
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 5.2e-31 137.9 120 62.5
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 6.7e-31 137.5 82 82.9
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 8.8e-31 137.1 120 62.5
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 1.1e-30 136.7 121 61.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 1.5e-30 136.3 122 63.9
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.0e-30 136.0 82 85.4
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 2.0e-30 136.0 121 62.8
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 2.0e-30 136.0 82 78.0
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 2.6e-30 135.6 120 62.5
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.3e-30 135.2 125 62.4
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 4.4e-30 134.8 119 62.2
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 5.7e-30 134.4 120 61.7
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 5.7e-30 134.4 123 62.6
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 5.7e-30 134.4 120 62.5
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 9.7e-30 133.7 120 62.5
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.3e-29 133.3 114 65.8
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.7e-29 132.9 113 66.4
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.7e-29 132.9 86 76.7
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.7e-29 132.9 135 59.3
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 2.2e-29 132.5 117 62.4
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 2.2e-29 132.5 120 62.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 4.8e-29 131.3 121 65.3
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 4.8e-29 131.3 122 62.3
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 4.8e-29 131.3 82 78.0
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.4e-28 129.8 121 60.3
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.4e-28 129.8 82 78.0
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.8e-28 129.4 117 60.7
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.8e-28 129.4 117 60.7
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.8e-28 129.4 117 60.7
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 1.8e-28 129.4 113 62.8
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.8e-28 129.4 120 60.0
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 2.4e-28 129.0 120 61.7
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 2.4e-28 129.0 121 62.8
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 2.4e-28 129.0 113 62.8
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 3.1e-28 128.6 120 59.2
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.1e-28 128.6 83 75.9
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.1e-28 128.6 83 75.9
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 4.1e-28 128.3 113 62.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 4.1e-28 128.3 117 64.1
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 7.0e-28 127.5 116 65.5
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 7.0e-28 127.5 119 62.2
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 7.0e-28 127.5 117 63.2
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.2e-27 126.7 120 60.8
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.2e-27 126.7 119 58.0
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.2e-27 126.7 120 58.3
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 2.0e-27 125.9 118 61.0
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 2.0e-27 125.9 118 61.0
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 2.0e-27 125.9 119 61.3
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.0e-27 125.9 120 60.0
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 2.0e-27 125.9 118 61.0
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 2.6e-27 125.6 120 60.8
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.6e-27 125.6 86 74.4
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 3.5e-27 125.2 123 57.7
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.5e-27 124.8 120 61.7
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 4.5e-27 124.8 118 62.7
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 4.5e-27 124.8 118 62.7
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 4.5e-27 124.8 118 62.7
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 5.9e-27 124.4 121 59.5
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 7.7e-27 124.0 150 52.7
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.0e-26 123.6 117 59.0
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.0e-26 123.6 119 61.3
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.0e-26 123.6 76 80.3
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.7e-26 122.9 73 82.2
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-26 122.9 147 53.1
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.2e-26 122.5 95 68.4
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.9e-26 122.1 120 59.2
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.9e-26 122.1 81 70.4
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.9e-25 119.4 124 60.5
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.0e-23 113.6 122 54.1
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.3e-23 112.5 114 56.1
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 4.0e-23 111.7 73 72.6
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 4.0e-23 111.7 64 81.2
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 8.8e-23 110.5 91 63.7
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.8e-23 110.5 68 80.9
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.7e-21 105.1 97 63.9
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.2e-19 100.1 73 65.8
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.0e-19 99.4 116 46.6
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 5.9e-19 97.8 79 62.0
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.3e-18 96.7 59 78.0
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.7e-18 96.3 119 49.6
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.5e-18 94.4 53 88.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 6.5e-18 94.4 54 81.5
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 1.1e-17 93.6 100 49.0
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-16 90.1 100 54.0
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.2e-16 90.1 55 78.2
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 1.4e-15 86.7 120 48.3
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 1.5e-14 83.2 108 49.1
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 5.7e-14 81.3 73 56.2
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.8e-13 79.0 136 41.9
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 7.7e-11 70.9 103 43.7
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 5.2e-07 58.2 92 40.2


User provided reference genes

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