Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 1.4e-235 819.3 426 100.0
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 3.9e-182 641.7 381 87.9
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 8.4e-169 597.4 372 86.8
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 1.1e-163 580.5 435 70.8
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.2e-159 567.0 435 69.7
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.0e-158 563.9 445 71.5
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.4e-157 557.8 456 70.0
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 9.7e-157 557.4 431 68.4
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.1e-155 553.9 436 67.7
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 2.0e-154 549.7 439 69.5
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.3e-153 547.0 443 70.2
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 5.0e-153 545.0 431 67.1
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 6.5e-153 544.7 445 69.0
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 9.4e-152 540.8 437 68.0
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.7e-151 539.3 431 67.1
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 2.7e-151 539.3 431 66.4
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 6.5e-145 518.1 437 65.0
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 1.4e-142 510.4 431 63.8
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 2.3e-142 509.6 445 63.1
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 3.0e-142 509.2 438 63.7
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 9.7e-141 504.2 435 63.9
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 1.3e-140 503.8 382 69.4
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 2.4e-139 499.6 439 62.6
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 3.1e-139 499.2 433 62.8
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 2.0e-138 496.5 437 64.5
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 5.0e-137 491.9 445 62.2
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 8.8e-134 481.1 379 70.2
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 5.3e-131 471.9 379 68.3
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 2.5e-128 463.0 427 59.5
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 4.7e-127 458.8 437 59.0
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 6.1e-127 458.4 427 59.5
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 5.2e-126 455.3 385 66.0
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.2e-125 454.1 443 57.6
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 4.4e-125 452.2 427 58.8
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 7.5e-125 451.4 435 57.9
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.3e-124 450.7 398 61.8
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.4e-123 446.4 415 59.5
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 3.1e-123 446.0 439 55.1
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 2.7e-122 443.0 429 57.3
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 5.9e-122 441.8 439 56.3
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 1.5e-120 437.2 395 60.5
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 2.8e-119 433.0 399 61.7
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 3.6e-119 432.6 422 57.1
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 8.0e-119 431.4 437 56.3
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 2.3e-118 429.9 391 60.4
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 8.9e-118 427.9 411 57.9
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.5e-117 427.2 427 57.8
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 5.7e-117 425.2 422 57.8
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 3.7e-116 422.5 448 53.8
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 1.1e-115 421.0 433 53.8
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 5.4e-115 418.7 433 54.3
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 7.0e-115 418.3 517 50.9
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 2.0e-114 416.8 389 59.9
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.5e-114 416.0 433 54.0
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 4.5e-114 415.6 433 54.3
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.7e-113 413.7 436 53.9
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 3.8e-113 412.5 434 53.7
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 5.0e-113 412.1 433 53.3
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 8.6e-113 411.4 434 53.7
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 4.7e-111 405.6 433 52.9
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 6.1e-111 405.2 436 52.8
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 6.1e-111 405.2 410 54.9
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.4e-110 404.1 431 56.1
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 1.8e-110 403.7 459 51.4
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 8.9e-110 401.4 431 53.6
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 2.6e-109 399.8 445 52.6
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 3.4e-109 399.4 434 52.3
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 5.8e-109 398.7 415 53.5
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 1.7e-108 397.1 446 52.7
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 6.4e-108 395.2 393 56.2
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 6.4e-108 395.2 435 51.0
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 1.1e-107 394.4 436 53.4
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 3.5e-106 389.4 469 49.5
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 3.5e-106 389.4 426 52.3
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 5.0e-105 385.6 305 68.5
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 3.6e-103 379.4 401 52.4
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 2.9e-100 369.8 549 44.6
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 3.5e-98 362.8 441 51.2
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 2.5e-96 356.7 389 53.2
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 3.3e-96 356.3 390 52.1
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 8.1e-95 351.7 318 60.1
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 4.0e-94 349.4 426 49.5
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 3.5e-90 336.3 333 57.7
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 2.5e-88 330.1 335 57.0
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 9.5e-88 328.2 441 46.0
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 1.6e-87 327.4 445 46.5
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.5e-85 320.9 326 55.5
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 4.4e-85 319.3 216 74.5
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 5.4e-83 312.4 352 53.1
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 7.1e-83 312.0 360 48.3
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 4.6e-82 309.3 201 78.6
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 3.1e-78 296.6 342 50.9
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.2e-77 294.7 349 50.1
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.0e-77 293.9 412 42.2
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 9.3e-75 285.0 411 41.8
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 6.0e-74 282.3 391 47.1
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 9.9e-69 265.0 432 41.9
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 2.1e-66 257.3 287 51.9
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.3e-65 253.8 242 55.4
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 5.8e-61 239.2 437 40.0
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 7.1e-51 205.7 121 88.4
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 5.1e-49 199.5 320 40.3
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 7.7e-45 185.7 370 33.0
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 3.8e-44 183.3 419 32.2
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.4e-43 181.4 237 46.4
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 2.5e-43 180.6 389 34.4
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 3.2e-43 180.3 388 34.5
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 3.0e-41 173.7 119 73.9
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 2.8e-39 167.2 290 40.3
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 3.2e-35 153.7 181 54.1
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 3.9e-33 146.7 461 26.9
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 2.9e-28 130.6 164 50.0
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 1.9e-27 127.9 113 60.2
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.1e-18 97.8 241 32.0
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 6.8e-17 92.8 108 51.9
COL.COLO4_14761 Corchorus olitorius HOM05D006045 ORTHO05D007678 1.6e-13 81.6 64 67.2
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 2.6e-08 64.3 72 52.8
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 9.8e-08 62.4 106 38.7
TPR.G40448 Trifolium pratense HOM05D006045 ORTHO05D007678 8.3e-07 59.3 60 51.7
Dinv35575 Davidia involucrata HOM05D006045 ORTHO05D007678 1.8e-06 58.2 211 30.8


User provided reference genes

Program Settings