Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 8.5e-131 470.3 232 100.0
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 3.1e-80 302.4 245 63.3
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 1.7e-67 260.0 223 60.1
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 2.4e-61 239.6 254 54.3
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 7.3e-58 228.0 261 52.9
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 2.1e-57 226.5 255 52.9
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 4.7e-57 225.3 255 52.5
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.2e-55 220.7 255 51.8
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 4.4e-55 218.8 255 52.2
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 1.7e-51 206.8 261 49.8
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 1.3e-46 190.7 238 50.0
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 1.7e-46 190.3 269 44.2
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 1.3e-41 174.1 259 44.0
FAN28G1746 Fragaria x ananassa HOM05D007762 ORTHO05D008066 3.7e-41 172.6 215 49.3
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 1.8e-40 170.2 233 48.5
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 1.8e-40 170.2 261 42.5
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 1.2e-39 167.5 270 43.3
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 1.5e-39 167.2 238 43.7
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 4.9e-38 162.2 239 43.5
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 3.2e-37 159.5 239 44.8
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 1.6e-36 157.1 268 43.7
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 1.6e-36 157.1 264 41.7
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 2.1e-36 156.8 260 43.1
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 6.0e-36 155.2 262 40.8
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 7.9e-36 154.8 259 42.5
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 1.3e-35 154.1 263 40.3
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 1.3e-35 154.1 263 40.3
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 1.8e-35 153.7 255 42.7
Rhsim05G0194300 Rhododendron simsii HOM05D007762 ORTHO05D008066 5.1e-35 152.1 240 43.3
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 6.7e-35 151.8 249 39.8
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 1.5e-34 150.6 249 42.6
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.5e-34 150.6 252 42.1
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.5e-34 150.6 252 42.1
Lalb_Chr19g0125241 Lupinus albus HOM05D007762 ORTHO05D008066 3.3e-34 149.4 246 41.5
Glyma.07G134000 Glycine max HOM05D007762 ORTHO05D008066 9.6e-34 147.9 242 41.7
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 2.8e-33 146.4 267 37.8
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 3.7e-33 146.0 255 39.2
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 8.2e-33 144.8 252 40.9
vmacro20167 Vaccinium macrocarpon HOM05D007762 ORTHO05D008066 1.1e-32 144.4 262 42.0
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 3.1e-32 142.9 262 37.8
Phvul.008G119100 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 5.8e-31 138.7 249 41.4
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 1.3e-30 137.5 262 38.2
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 4.9e-30 135.6 241 41.1
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 5.5e-29 132.1 241 40.2
Medtr7g062260 Medicago truncatula HOM05D007762 ORTHO05D008066 7.1e-29 131.7 226 40.7
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 9.3e-29 131.3 262 39.3
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 1.6e-28 130.6 256 36.3
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 7.9e-28 128.3 262 35.9
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 7.9e-28 128.3 270 36.7
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 1.8e-27 127.1 268 36.9
Psat3g137360 Pisum sativum HOM05D007762 ORTHO05D008066 3.0e-27 126.3 232 37.1
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 1.1e-26 124.4 234 39.7
MELO3C009249.2 Cucumis melo HOM05D007762 ORTHO05D008066 5.7e-26 122.1 231 35.9
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 9.7e-26 121.3 241 39.0
TPR.G1723 Trifolium pratense HOM05D007762 ORTHO05D008066 1.1e-24 117.9 231 39.0
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 2.4e-24 116.7 260 35.4
PGR004G1606 Punica granatum HOM05D007762 ORTHO05D008066 5.3e-24 115.5 245 35.5
Sopen10g035940 Solanum pennellii HOM05D007762 ORTHO05D008066 6.9e-24 115.2 236 39.0
Solyc10g086560.3 Solanum lycopersicum HOM05D007762 ORTHO05D008066 9.0e-24 114.8 236 39.0
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 4.5e-23 112.5 237 38.0
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 5.9e-23 112.1 240 35.8
Potri.016G100100 Populus trichocarpa HOM05D007762 ORTHO05D008066 5.9e-23 112.1 258 34.5
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 5.9e-23 112.1 231 41.1
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 1.0e-22 111.3 272 32.7
Duzib093G0438 Durio zibethinus HOM05D007762 ORTHO05D008066 8.5e-22 108.2 222 38.7
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 4.6e-20 102.4 249 34.9
MSTRG.26781 Avicennia marina HOM05D007762 ORTHO05D008066 7.9e-20 101.7 257 34.6
Nn2g11166 Nelumbo nucifera HOM05D007762 ORTHO05D008066 1.4e-19 100.9 264 33.3
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 6.7e-19 98.6 270 33.0
MBI05_g29690_MAGBIO Magnolia biondii HOM05D007762 ORTHO05D008066 3.3e-18 96.3 241 37.3
arahy.Tifrunner.gnm1.ann1.NCI3TY Arachis hypogaea HOM05D007762 ORTHO05D008066 2.2e-17 93.6 208 36.1
DCAR_024059 Daucus carota HOM05D007762 ORTHO05D008066 1.4e-16 90.9 252 32.5
PGSC0003DMG402019151 Solanum tuberosum HOM05D007762 ORTHO05D008066 2.0e-15 87.0 214 34.1
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 3.4e-15 86.3 264 31.1
Peaxi162Scf00165g00078 Petunia axillaris HOM05D007762 ORTHO05D008066 5.9e-15 85.5 263 31.2
Migut.L01955 Erythranthe guttata HOM05D007762 ORTHO05D008066 1.0e-14 84.7 252 31.7
PSO339G2571 Papaver somniferum HOM05D007762 ORTHO05D008066 3.8e-14 82.8 247 33.6
Sc22g0004450 Simmondsia chinensis HOM05D007762 ORTHO05D008066 5.0e-14 82.4 221 31.2
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 1.4e-13 80.9 138 36.2
Lsat_1_v5_gn_9_33361 Lactuca sativa HOM05D007762 ORTHO05D008066 1.4e-13 80.9 239 31.4
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 4.2e-13 79.3 240 30.8
AUR62042387 Chenopodium quinoa HOM05D021339 ORTHO05D008066 4.2e-13 79.3 229 32.8
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 2.1e-12 77.0 242 33.5
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 6.1e-12 75.5 241 33.6
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 1.0e-11 74.7 235 31.1
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 1.4e-11 74.3 246 28.0
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 1.8e-11 73.9 235 31.5
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 5.1e-11 72.4 97 43.3
MSTRG.5650 Avicennia marina HOM05D007762 ORTHO05D008066 8.8e-11 71.6 258 29.5
AUR62032040 Chenopodium quinoa HOM05D021339 ORTHO05D008066 1.1e-10 71.2 228 32.0
EL10As1g23088 Beta vulgaris HOM05D021339 ORTHO05D008066 2.0e-10 70.5 229 32.3
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 2.0e-10 70.5 97 44.3
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 2.6e-10 70.1 126 40.5
AL6G11430 Arabidopsis lyrata HOM05D012592 ORTHO05D008066 4.4e-10 69.3 234 32.5
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 4.4e-10 69.3 137 36.5
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 4.4e-10 69.3 137 36.5
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 4.4e-10 69.3 236 27.5
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 5.7e-10 68.9 241 30.3
Hund10692 Selenicereus undatus HOM05D021339 ORTHO05D008066 5.7e-10 68.9 234 28.6
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 7.4e-10 68.6 133 34.6
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 9.7e-10 68.2 77 49.4
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 9.7e-10 68.2 151 34.4
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 2.2e-09 67.0 151 34.4
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 2.2e-09 67.0 253 28.1
AUR62032712 Chenopodium quinoa HOM05D021339 ORTHO05D008066 3.7e-09 66.2 231 30.7
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 8.2e-09 65.1 122 37.7
Migut.J00315 Erythranthe guttata HOM05D007762 ORTHO05D008066 8.2e-09 65.1 214 29.9
Manes.09G092300 Manihot esculenta HOM05D007762 ORTHO05D008066 1.8e-08 63.9 88 44.3
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 2.4e-08 63.5 137 32.8
AT5G02200 Arabidopsis thaliana HOM05D012592 ORTHO05D008066 9.1e-08 61.6 233 31.3
THA.LOC104827023 Tarenaya hassleriana HOM05D012592 ORTHO05D008066 9.1e-08 61.6 264 27.7
CsaV3_4G025130 Cucumis sativus L. HOM05D041730 ORTHO05D034779 2.0e-07 60.5 93 44.1
CARHR211150 Cardamine hirsuta HOM05D012592 ORTHO05D008066 2.6e-07 60.1 57 57.9
MELO3C003141.2 Cucumis melo HOM05D041730 ORTHO05D034779 7.7e-07 58.5 86 43.0
Carub.0006s0104 Capsella rubella HOM05D012592 ORTHO05D008066 1.3e-06 57.8 63 54.0
Sp6g40240 Schrenkiella parvula HOM05D012592 ORTHO05D008066 1.7e-06 57.4 219 29.7
A10p33410 Brassica napus HOM05D012592 ORTHO05D008066 2.2e-06 57.0 241 27.4
BraA10t45372Z Brassica rapa HOM05D012592 ORTHO05D008066 2.9e-06 56.6 231 27.7


User provided reference genes

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