Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 1.8e-90 335.9 169 100.0
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 8.3e-51 204.1 221 57.0
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.0e-46 187.6 220 55.0
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.0e-46 187.6 220 55.0
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.0e-45 187.2 220 54.5
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.8e-45 184.1 220 54.5
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 2.0e-44 183.0 220 54.1
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.4e-44 182.2 220 53.6
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.8e-43 179.1 215 51.2
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.4e-42 176.0 218 50.9
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 5.9e-41 171.4 165 58.8
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.9e-39 166.4 216 49.5
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 3.6e-38 162.2 219 47.9
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 2.3e-37 159.5 219 49.3
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 4.0e-37 158.7 218 47.2
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 5.7e-36 154.8 216 46.3
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 7.5e-36 154.5 217 47.5
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.8e-34 149.8 230 45.7
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 2.4e-34 149.4 215 43.7
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.4e-34 149.4 217 48.4
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 5.4e-34 148.3 217 47.0
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.2e-33 147.1 225 44.4
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.2e-33 147.1 215 47.0
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 2.7e-33 146.0 215 44.7
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 3.5e-33 145.6 212 45.8
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 4.5e-33 145.2 211 45.5
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 1.0e-32 144.1 216 45.4
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.3e-32 143.7 211 45.0
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.7e-32 143.3 210 43.3
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 2.3e-32 142.9 222 46.4
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 5.0e-32 141.7 223 46.2
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 8.6e-32 141.0 212 45.8
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-31 140.2 213 44.1
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-31 140.2 213 44.1
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 1.5e-31 140.2 213 44.1
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.5e-31 140.2 226 41.2
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.9e-31 139.8 219 43.8
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 1.9e-31 139.8 218 43.6
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 2.5e-31 139.4 226 41.2
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 3.3e-31 139.0 223 42.6
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 3.3e-31 139.0 215 44.2
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 4.3e-31 138.7 214 43.0
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 7.3e-31 137.9 215 44.7
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 7.3e-31 137.9 220 42.7
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 2.8e-30 136.0 222 41.9
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.6e-30 135.6 223 43.0
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 3.6e-30 135.6 216 42.1
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 6.1e-30 134.8 223 44.4
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.8e-29 133.3 218 43.6
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.8e-29 133.3 192 46.9
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.3e-29 132.9 218 43.1
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 3.1e-29 132.5 215 42.8
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.1e-29 132.5 219 41.6
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 4.0e-29 132.1 216 43.1
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 6.8e-29 131.3 218 42.7
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 6.8e-29 131.3 214 43.5
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 6.8e-29 131.3 218 40.8
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 6.8e-29 131.3 219 41.6
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 8.9e-29 131.0 215 43.7
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.2e-28 130.6 220 41.8
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.0e-28 129.8 196 45.4
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.0e-28 129.8 219 38.8
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 2.0e-28 129.8 214 43.9
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.6e-28 129.4 219 39.3
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.4e-28 129.0 217 40.6
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.5e-28 127.9 217 40.6
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 9.8e-28 127.5 214 42.1
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.3e-27 127.1 222 41.4
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 1.3e-27 127.1 213 44.1
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 1.7e-27 126.7 192 45.8
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.7e-27 126.7 197 45.7
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 2.2e-27 126.3 217 41.0
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 3.7e-27 125.6 214 41.1
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 3.7e-27 125.6 210 42.4
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 4.9e-27 125.2 214 42.1
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 8.3e-27 124.4 209 41.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 1.4e-26 123.6 220 41.4
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 2.4e-26 122.9 212 40.1
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.2e-26 122.5 217 38.7
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 3.2e-26 122.5 214 43.0
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 5.4e-26 121.7 217 39.6
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 5.4e-26 121.7 226 38.5
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 5.4e-26 121.7 214 40.7
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 7.0e-26 121.3 219 40.2
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 9.2e-26 120.9 207 43.0
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 9.2e-26 120.9 226 38.5
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 1.6e-25 120.2 218 41.7
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 1.6e-25 120.2 226 38.5
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 2.7e-25 119.4 225 39.6
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.0e-24 117.5 214 37.4
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 1.3e-24 117.1 214 42.5
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 5.0e-24 115.2 187 42.2
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 7.3e-23 111.3 221 38.9
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 9.5e-23 110.9 223 37.7
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.2e-22 110.5 220 39.5
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 2.8e-22 109.4 222 39.2
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 6.2e-22 108.2 225 38.7
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 1.4e-21 107.1 218 36.7
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 1.8e-21 106.7 179 41.9
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 6.8e-21 104.8 223 34.5
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 6.8e-21 104.8 235 35.3
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 8.9e-21 104.4 214 37.9
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.0e-20 103.2 208 41.8
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 4.4e-20 102.1 212 38.2
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 7.5e-20 101.3 177 42.4
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 9.8e-20 100.9 268 33.6
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 9.8e-20 100.9 219 36.5
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 1.7e-19 100.1 198 40.9
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 8.3e-19 97.8 227 34.8
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 8.3e-19 97.8 195 40.0
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 1.1e-18 97.4 234 33.8
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.4e-18 97.1 240 35.8
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 2.4e-18 96.3 176 38.1
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 5.4e-18 95.1 170 40.0
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 7.0e-18 94.7 210 39.0
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 9.2e-18 94.4 189 40.2
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 9.2e-18 94.4 159 42.8
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 2.1e-17 93.2 135 45.9
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 2.7e-17 92.8 171 40.4
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 2.7e-17 92.8 231 35.5
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.5e-17 92.4 225 35.6
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 4.6e-17 92.0 224 34.8
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 4.6e-17 92.0 215 36.7
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 6.0e-17 91.7 227 34.4
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 6.0e-17 91.7 175 38.3
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.8e-17 91.3 228 35.1
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.3e-16 90.5 230 34.8
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.3e-16 90.5 192 36.5
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.7e-16 90.1 208 37.5
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 1.7e-16 90.1 207 41.1
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 1.7e-16 90.1 208 34.6
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 2.3e-16 89.7 95 53.7
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.3e-16 89.7 208 37.0
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.3e-16 89.7 223 35.4
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 5.1e-16 88.6 95 53.7
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.6e-16 88.2 107 52.3
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 6.6e-16 88.2 206 38.3
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 8.6e-16 87.8 203 37.9
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 8.6e-16 87.8 111 49.5
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 8.6e-16 87.8 223 35.4
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.1e-15 87.4 148 42.6
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 1.5e-15 87.0 210 34.3
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 2.5e-15 86.3 107 50.5
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.3e-15 85.5 228 34.2
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 9.5e-15 84.3 134 42.5
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 9.5e-15 84.3 203 35.5
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 4.7e-14 82.0 100 48.0
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.7e-14 82.0 202 34.7
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 1.1e-13 80.9 99 47.5
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 1.1e-13 80.9 203 35.5
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 1.4e-13 80.5 103 45.6
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 3.1e-13 79.3 98 49.0
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 3.1e-13 79.3 95 50.5
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 5.2e-13 78.6 170 33.5
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 5.2e-13 78.6 118 41.5
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 6.8e-13 78.2 84 56.0
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 8.9e-13 77.8 168 33.9
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 8.9e-13 77.8 200 36.0
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 2.0e-12 76.6 168 41.1
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 2.6e-12 76.3 100 45.0
MD04G1127100 Malus domestica HOM05D003527 ORTHO05D004099 2.6e-12 76.3 41 87.8
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 4.4e-12 75.5 206 34.0
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.3e-11 73.9 220 29.5
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 1.3e-11 73.9 96 45.8
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.9e-11 72.8 167 35.9
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.7e-11 72.4 195 35.4
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 8.3e-11 71.2 185 37.8
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 2.1e-09 66.6 111 43.2
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 4.6e-09 65.5 123 40.7
Lalb_Chr13g0291191 Lupinus albus HOM05D003527 ORTHO05D004099 7.8e-09 64.7 41 73.2
Dinv35615 Davidia involucrata HOM05D003527 ORTHO05D004099 6.6e-08 61.6 41 70.7
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 1.1e-07 60.8 233 30.5
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 2.5e-07 59.7 235 31.5
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 2.5e-07 59.7 170 31.8
Sc01g0004200 Simmondsia chinensis HOM05D003527 ORTHO05D004099 4.3e-07 58.9 93 40.9
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 7.3e-07 58.2 165 32.1
Actinidia34400 Actinidia chinensis HOM05D003527 ORTHO05D004099 9.5e-07 57.8 41 68.3
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 1.6e-06 57.0 121 37.2
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 2.1e-06 56.6 172 33.1
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 3.6e-06 55.8 129 37.2
Lalb_Chr07g0193911 Lupinus albus HOM05D003527 ORTHO05D004099 8.1e-06 54.7 42 64.3


User provided reference genes

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