Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.2e-239 832.8 439 100.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.6e-210 734.6 439 87.0
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 6.4e-204 714.1 439 85.0
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 4.1e-195 684.9 434 80.4
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.1e-191 672.5 437 79.4
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.2e-191 671.0 436 79.1
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.3e-180 636.7 435 76.1
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.9e-180 635.6 438 75.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 2.4e-179 632.5 437 77.3
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.1e-178 629.4 434 77.0
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 2.7e-178 629.0 431 75.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 6.0e-178 627.9 431 75.4
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.7e-177 626.3 442 75.1
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.3e-177 625.9 517 66.2
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 3.9e-177 625.2 450 73.1
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 5.6e-176 621.3 435 74.5
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.3e-175 620.2 441 74.6
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.4e-174 616.7 439 72.4
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 1.3e-172 610.1 438 71.9
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.4e-172 607.4 427 75.4
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 2.4e-171 605.9 440 73.6
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 5.4e-171 604.7 440 73.2
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 7.1e-171 604.4 434 72.8
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.3e-169 600.1 444 70.9
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.8e-169 599.7 430 73.3
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 3.1e-166 589.0 434 70.7
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 9.9e-165 583.9 434 70.5
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.7e-164 583.2 427 73.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 7.1e-163 577.8 468 69.2
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 9.3e-163 577.4 440 68.9
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 9.3e-163 577.4 436 69.5
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 2.7e-162 575.9 434 68.7
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 6.0e-162 574.7 420 71.4
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 7.9e-162 574.3 436 69.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 1.0e-161 573.9 436 69.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 3.9e-161 572.0 424 70.5
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 6.7e-161 571.2 441 68.9
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.9e-160 569.7 426 69.2
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.5e-160 569.3 444 70.0
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 3.3e-160 568.9 422 69.2
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.3e-160 568.9 424 70.3
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 3.3e-160 568.9 442 69.5
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 5.6e-160 568.2 435 69.4
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 7.4e-160 567.8 432 69.4
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.6e-159 566.6 430 69.3
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.1e-159 566.2 436 68.8
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.8e-159 565.8 436 68.6
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 8.2e-159 564.3 444 68.9
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.2e-159 564.3 442 69.0
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.4e-158 563.5 426 71.1
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.4e-158 562.8 426 69.2
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 3.1e-158 562.4 434 68.0
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.1e-158 562.4 438 68.0
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 4.0e-158 562.0 434 68.2
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 5.3e-158 561.6 438 67.6
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 9.0e-158 560.8 430 68.1
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.0e-156 557.4 409 71.1
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.3e-156 557.0 431 68.0
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 2.2e-156 556.2 428 68.9
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.1e-155 553.9 425 68.2
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.1e-155 553.9 425 68.5
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.1e-155 553.9 441 68.3
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.4e-155 553.5 427 69.6
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 1.9e-155 553.1 427 69.6
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 2.5e-155 552.7 425 69.2
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 2.5e-155 552.7 433 68.1
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 2.5e-155 552.7 370 77.3
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 3.2e-155 552.4 427 69.3
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 9.3e-155 550.8 425 68.9
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 9.3e-155 550.8 432 69.7
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.5e-154 548.9 422 71.3
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.0e-153 547.4 439 65.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 3.0e-153 545.8 424 67.5
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.9e-153 545.4 430 68.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 6.7e-153 544.7 444 64.9
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.8e-151 539.3 427 68.9
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.4e-150 536.2 438 65.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.3e-150 535.0 444 67.1
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 5.3e-150 535.0 436 65.1
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 5.3e-150 535.0 407 68.1
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-149 533.9 435 66.7
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-149 533.9 436 64.9
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.0e-149 533.1 421 65.8
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 5.9e-149 531.6 443 65.0
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 7.7e-149 531.2 445 64.5
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 7.7e-149 531.2 388 69.8
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 2.9e-148 529.3 444 64.2
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 3.8e-148 528.9 418 67.2
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 3.2e-147 525.8 442 64.3
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 4.2e-147 525.4 439 64.5
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 4.2e-147 525.4 420 65.2
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 9.4e-147 524.2 444 63.5
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 7.9e-146 521.2 434 63.4
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 7.9e-146 521.2 471 63.1
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.3e-145 519.6 418 64.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.0e-145 519.2 436 63.8
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 5.1e-145 518.5 426 64.1
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.1e-144 517.3 428 64.0
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 3.3e-144 515.8 432 63.9
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 7.4e-144 514.6 438 62.6
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.8e-143 512.7 427 64.9
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.4e-142 510.4 428 67.1
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 3.1e-142 509.2 431 61.9
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 3.1e-142 509.2 429 61.3
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.2e-141 507.3 423 63.4
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.4e-141 505.8 440 62.3
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 5.9e-141 505.0 438 63.7
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.2e-140 503.1 403 65.3
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.1e-138 496.5 404 63.9
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 2.3e-137 493.0 410 64.1
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.4e-136 488.8 434 61.1
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 8.2e-135 484.6 445 60.0
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 4.4e-128 462.2 511 53.8
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 2.2e-127 459.9 373 64.9
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.4e-126 457.2 430 61.6
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.4e-126 456.4 431 59.9
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 5.3e-126 455.3 432 57.6
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.5e-123 446.4 421 58.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 7.2e-123 444.9 430 56.5
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 5.7e-120 435.3 438 57.3
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 8.3e-119 431.4 318 73.0
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.0e-112 410.2 381 62.7
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.5e-107 394.0 299 68.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 3.3e-107 392.9 433 54.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 6.1e-106 388.7 293 67.6
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.3e-105 386.7 427 53.9
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 3.9e-100 369.4 345 58.6
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-93 347.1 432 45.1
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.3e-92 343.6 431 46.4
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 7.3e-91 338.6 282 62.1
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 9.5e-83 311.6 243 67.9
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 8.1e-74 282.0 178 78.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.4e-73 280.4 327 52.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.8e-73 278.9 423 45.4
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.6e-69 267.7 177 75.1
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.1e-67 261.5 204 69.1
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.1e-62 242.3 196 62.8
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.1e-58 230.7 176 67.0
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 9.6e-51 205.3 187 62.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.7e-50 203.4 160 69.4
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 7.9e-45 185.7 242 49.6
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.1e-42 177.6 139 60.4
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.8e-42 176.4 146 67.8
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 5.7e-35 152.9 120 71.7
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 6.5e-31 139.4 111 65.8
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 3.0e-28 130.6 90 68.9
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.8e-26 124.0 103 60.2
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.8e-26 123.2 80 80.0
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.7e-23 114.8 124 58.9
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.2e-21 108.6 332 29.8
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 2.5e-14 84.3 113 43.4
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 7.2e-14 82.8 440 26.4
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.2e-13 82.0 430 25.3
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 8.2e-10 69.3 53 64.2
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 9.1e-09 65.9 40 82.5
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.2e-06 57.4 201 24.9
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 9.4e-06 55.8 245 26.1


User provided reference genes

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