Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.7e-255 885.6 464 100.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.4e-230 802.7 464 90.3
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 9.7e-227 790.0 464 88.8
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 4.8e-226 787.7 464 88.6
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 4.1e-225 784.6 464 88.4
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.8e-220 766.9 464 86.6
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 3.4e-216 755.0 444 89.0
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.1e-206 723.4 470 80.6
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 1.2e-205 719.9 446 84.1
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.2e-205 719.9 471 79.6
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.4e-204 716.5 446 83.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.1e-203 713.4 482 77.8
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 1.1e-201 706.8 472 78.6
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.4e-201 706.4 464 80.0
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.8e-201 706.1 470 79.6
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 2.6e-200 702.2 471 78.1
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 5.9e-200 701.0 445 80.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 7.7e-200 700.7 469 78.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.3e-199 699.9 473 77.6
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 6.5e-199 697.6 472 79.0
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 6.5e-199 697.6 470 77.0
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 8.5e-199 697.2 469 78.7
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 8.5e-199 697.2 470 78.1
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.5e-198 696.4 471 78.1
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 1.9e-198 696.0 465 78.9
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 3.2e-198 695.3 446 81.2
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 4.2e-198 694.9 477 78.4
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 2.7e-197 692.2 464 79.7
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 3.6e-197 691.8 472 76.9
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 4.7e-197 691.4 470 77.9
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 6.1e-197 691.0 509 73.9
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.4e-196 689.9 445 80.4
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.3e-196 689.1 467 78.8
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 5.2e-196 688.0 470 76.4
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.2e-195 686.8 465 76.1
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.5e-195 686.4 452 79.6
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.5e-195 686.4 472 76.3
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 2.6e-195 685.6 475 76.2
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.4e-195 685.3 472 77.3
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.3e-194 683.3 472 76.7
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.1e-193 680.2 472 76.5
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 3.1e-193 678.7 465 75.5
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 7.0e-193 677.6 462 76.8
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 2.0e-192 676.0 454 78.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 3.5e-192 675.2 466 75.5
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.7e-191 672.9 473 75.9
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.7e-191 672.9 471 75.8
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.2e-191 672.5 466 76.8
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 2.9e-191 672.2 448 79.0
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 5.0e-191 671.4 471 76.0
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 5.0e-191 671.4 448 77.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 2.5e-190 669.1 466 75.3
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 4.2e-190 668.3 475 75.2
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 7.2e-190 667.5 466 75.8
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.6e-189 666.4 462 75.3
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 4.7e-189 664.8 461 74.8
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 6.1e-189 664.5 470 74.7
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.4e-188 663.3 444 77.5
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.4e-188 663.3 464 76.3
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.8e-188 662.9 474 73.6
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 2.0e-187 659.4 461 75.3
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.6e-187 659.1 470 74.0
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.4e-187 658.3 475 73.1
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 9.8e-187 657.1 469 73.6
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.3e-186 656.8 468 73.5
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.7e-186 656.4 478 73.2
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 2.2e-186 656.0 452 75.0
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 8.3e-186 654.1 461 74.4
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 8.3e-186 654.1 444 76.4
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 2.4e-185 652.5 444 75.9
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.1e-185 652.1 444 76.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 7.0e-185 651.0 444 76.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 9.1e-185 650.6 444 75.9
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.6e-184 649.8 462 74.7
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.6e-184 649.8 444 75.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 3.5e-184 648.7 467 73.0
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.6e-183 644.4 444 75.5
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 6.6e-183 644.4 461 74.0
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.1e-182 643.7 459 74.1
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.5e-182 643.3 444 75.0
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.5e-182 643.3 444 75.5
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.3e-182 642.1 478 71.8
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.7e-181 638.3 445 74.4
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 6.8e-180 634.4 399 83.2
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.5e-179 633.3 489 71.2
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 9.8e-179 630.6 470 71.1
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 4.9e-178 628.2 454 74.0
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 6.4e-178 627.9 409 80.4
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.1e-177 627.1 458 71.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 8.6e-175 617.5 406 79.6
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.9e-174 616.3 432 74.3
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 6.2e-173 611.3 491 68.2
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.3e-170 603.6 429 74.4
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.1e-169 600.5 423 76.1
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.2e-168 597.0 425 75.8
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 2.0e-168 596.3 550 61.1
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 1.3e-167 593.6 422 72.5
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 1.7e-167 593.2 395 78.7
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.6e-163 579.3 423 70.7
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 4.9e-162 575.1 427 72.8
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 6.6e-159 564.7 409 73.8
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.1e-156 557.4 444 66.7
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 3.1e-156 555.8 432 67.6
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.3e-154 550.4 386 73.6
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 6.0e-152 541.6 398 74.6
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.5e-142 510.4 477 62.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 2.9e-138 496.1 345 78.0
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 7.4e-134 481.5 424 61.3
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 5.3e-132 475.3 360 68.1
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 3.2e-129 466.1 426 62.9
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.8e-125 453.0 324 75.9
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.7e-122 443.7 329 69.6
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 2.9e-122 443.0 437 57.9
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 2.3e-119 433.3 455 53.6
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.0e-107 393.7 253 82.2
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 2.9e-106 389.8 388 58.5
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.0e-86 323.9 241 73.0
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 7.7e-83 312.0 236 72.0
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.3e-77 292.4 202 76.2
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.4e-76 289.3 195 76.9
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 8.3e-69 265.4 204 69.1
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 5.0e-66 256.1 218 60.6
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 6.6e-66 255.8 147 85.0
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-61 241.5 182 75.3
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 8.3e-53 212.2 456 35.3
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.3e-49 199.1 124 75.8
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.9e-36 157.9 137 64.2
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.9e-36 157.9 137 64.2
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 5.4e-36 156.4 149 55.7
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 9.6e-33 145.6 263 38.8
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 3.6e-32 143.7 102 71.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 8.9e-31 139.0 301 36.9
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.8e-30 136.3 263 36.9
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 2.9e-29 134.0 101 73.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.5e-27 127.1 99 69.7
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 7.8e-27 125.9 106 60.4
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 9.3e-20 102.4 120 53.3
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 5.6e-17 93.2 87 57.5
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 5.8e-14 83.2 46 76.1
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 5.8e-14 83.2 46 76.1
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.2e-13 81.3 89 56.2
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.9e-13 80.9 77 49.4
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.9e-13 80.9 77 49.4
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-12 79.0 76 56.6
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 3.2e-12 77.4 60 56.7
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.2e-12 77.4 176 35.8
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 4.2e-12 77.0 167 34.7
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 9.3e-12 75.9 64 64.1
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 4.6e-11 73.6 76 57.9
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 6.0e-11 73.2 64 60.9
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 6.0e-11 73.2 45 77.8
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 7.9e-11 72.8 64 60.9
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 7.9e-11 72.8 81 53.1
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 59.4
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 59.4
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 59.4
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 59.4
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 86 51.2
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 59.4
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 59.4
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 2.3e-10 71.2 64 59.4
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 3.9e-10 70.5 64 59.4
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 4.8e-08 63.5 66 56.1
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 1.1e-07 62.4 48 70.8
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 2.0e-06 58.2 57 57.9
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 2.6e-06 57.8 45 64.4
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 1.0e-05 55.8 55 49.1


User provided reference genes

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