Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.1e-109 399.1 201 100.0
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 9.1e-89 330.5 201 84.6
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 8.5e-87 323.9 206 82.0
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.4e-83 310.8 202 81.2
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.7e-82 309.7 197 79.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 4.1e-81 305.1 204 80.4
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 4.1e-81 305.1 204 80.4
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 7.0e-81 304.3 203 80.8
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.5e-78 296.6 190 83.7
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.5e-78 295.8 206 77.2
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 2.7e-77 292.4 207 75.4
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 6.7e-76 287.7 209 74.6
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.5e-75 286.6 200 74.5
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 5.7e-75 284.6 202 75.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.3e-74 283.5 210 72.4
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.2e-74 282.7 200 74.0
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 8.2e-74 280.8 205 73.2
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 8.2e-74 280.8 205 73.2
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-73 280.0 205 73.2
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 2.4e-73 279.3 205 72.2
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.1e-73 278.9 202 69.8
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 3.1e-73 278.9 207 73.4
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 5.3e-73 278.1 215 69.8
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.6e-72 276.6 204 72.1
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 1.6e-72 276.6 204 72.1
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 2.0e-72 276.2 204 71.1
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.0e-72 276.2 204 73.0
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 4.5e-72 275.0 210 71.4
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.5e-70 270.0 202 70.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.5e-70 269.2 203 70.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 5.5e-70 268.1 206 72.8
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 9.4e-70 267.3 203 69.5
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.2e-69 266.9 214 67.8
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 3.6e-69 265.4 214 66.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.7e-69 265.0 207 71.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 8.0e-69 264.2 207 67.6
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 2.0e-67 259.6 201 66.7
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 2.6e-67 259.2 204 69.1
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.4e-67 258.5 201 66.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 9.8e-67 257.3 202 67.8
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 9.8e-67 257.3 202 67.8
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 9.8e-67 257.3 201 65.2
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 9.8e-67 257.3 201 69.2
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 1.7e-66 256.5 211 65.9
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 1.7e-66 256.5 203 64.5
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 4.8e-66 255.0 203 68.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.1e-65 251.9 207 66.2
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 4.1e-65 251.9 197 68.5
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 9.1e-65 250.8 214 65.4
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 9.1e-65 250.8 213 62.4
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.2e-64 250.4 208 63.5
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.0e-63 247.3 217 61.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 1.7e-63 246.5 201 63.7
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 8.6e-63 244.2 217 63.1
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.5e-62 243.4 207 62.8
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.5e-62 243.4 194 67.5
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.9e-62 243.0 208 62.0
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.5e-62 242.7 202 63.9
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.5e-62 242.7 214 62.6
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 4.2e-62 241.9 217 62.7
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 7.2e-62 241.1 202 60.4
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.6e-61 240.0 201 63.7
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.1e-61 239.6 192 65.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.1e-61 239.6 222 61.3
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 2.8e-61 239.2 201 62.2
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 2.8e-61 239.2 219 59.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 6.1e-61 238.0 212 62.7
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 8.0e-61 237.7 204 64.7
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 8.0e-61 237.7 230 60.4
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.0e-60 237.3 202 64.9
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 1.0e-60 237.3 201 64.2
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.8e-60 236.5 206 62.1
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 2.3e-60 236.1 202 63.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.3e-60 236.1 202 64.9
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 2.3e-60 236.1 201 63.7
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.3e-60 236.1 207 63.3
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 3.0e-60 235.7 216 61.1
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 4.0e-60 235.3 203 60.6
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 4.0e-60 235.3 206 62.6
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 5.2e-60 235.0 212 59.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 6.8e-60 234.6 200 64.0
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 8.9e-60 234.2 209 59.8
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 2.0e-59 233.0 205 62.4
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 2.6e-59 232.6 202 60.4
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.4e-59 232.3 210 61.0
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 5.7e-59 231.5 201 60.2
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.7e-58 229.9 202 59.9
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.2e-58 229.6 200 59.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 3.7e-58 228.8 217 59.4
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.3e-58 228.0 204 62.7
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.4e-57 226.1 215 60.0
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 1.2e-56 223.8 249 55.8
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.6e-56 223.4 221 55.2
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 2.0e-56 223.0 225 56.9
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 3.8e-55 218.8 196 61.2
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 3.8e-55 218.8 215 57.2
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.8e-55 218.8 210 57.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.2e-53 213.8 209 56.5
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-52 210.7 195 59.0
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 1.8e-52 209.9 207 54.6
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 5.2e-52 208.4 214 55.1
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 8.9e-52 207.6 223 53.4
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.5e-51 206.8 187 62.6
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.0e-51 206.5 158 69.0
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 2.6e-51 206.1 209 56.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 7.5e-51 204.5 199 58.3
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 2.9e-50 202.6 212 52.8
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.4e-50 201.4 154 67.5
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 8.3e-50 201.1 151 70.2
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 4.1e-49 198.7 208 53.4
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 5.4e-49 198.4 205 52.7
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.7e-48 196.1 213 54.0
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 8.9e-44 181.0 183 52.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.6e-43 179.5 131 72.5
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 7.5e-43 177.9 186 54.8
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 1.4e-41 173.7 205 49.3
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.9e-41 173.3 180 52.8
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 3.0e-39 166.0 217 44.7
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 8.6e-39 164.5 214 45.8
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 5.6e-38 161.8 200 47.0
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.1e-37 159.8 162 51.2
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.4e-36 157.1 118 66.1
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.8e-36 156.8 205 46.8
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.3e-36 156.4 138 60.9
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 6.8e-36 154.8 199 43.2
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.0e-35 153.3 216 41.7
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.9e-34 149.4 193 43.5
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.9e-33 146.7 199 43.7
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.4e-33 146.4 207 46.9
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 7.1e-33 144.8 216 40.7
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.6e-32 143.7 221 40.7
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-31 140.6 144 54.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 2.3e-31 139.8 116 59.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 8.6e-31 137.9 180 41.7
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 1.6e-29 133.7 98 64.3
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 6.2e-29 131.7 121 62.8
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 5.2e-28 128.6 121 62.0
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.2e-27 127.5 173 41.0
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 3.8e-26 122.5 191 37.7
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 6.4e-26 121.7 191 42.4
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.6e-24 117.1 207 36.2
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 6.0e-24 115.2 91 51.6
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.3e-23 113.2 183 38.3
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 1.2e-21 107.5 150 36.0
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 1.6e-21 107.1 90 53.3
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 2.4e-20 103.2 195 39.5
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 9.0e-20 101.3 110 56.4
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 3.4e-19 99.4 101 49.5
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 9.9e-19 97.8 133 41.4
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-18 97.4 87 48.3
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.3e-18 97.4 144 37.5
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 3.2e-17 92.8 107 53.3
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 1.3e-15 87.4 114 43.9
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 5.6e-14 82.0 77 61.0
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.3e-13 80.9 171 36.8
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 8.1e-13 78.2 73 58.9
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 9.9e-11 71.2 90 50.0
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.9e-09 67.0 73 58.9
AT4G18692 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 1.0e-07 61.2 66 57.6
AT3G53342 Arabidopsis thaliana HOM05D004429 ORTHO05D021447 2.3e-07 60.1 66 57.6
Ah.00g000610 Amaranthus hybridus HOM05D004429 ORTHO05D005583 4.3e-06 55.8 79 43.0


User provided reference genes

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