Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 2.4e-109 399.1 230 100.0
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 8.8e-80 300.8 230 67.4
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 9.1e-77 290.8 230 70.0
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.5e-66 256.1 218 57.8
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 4.2e-66 255.4 231 64.5
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.5e-66 254.2 225 58.2
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 4.7e-65 251.9 220 60.0
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.2e-63 247.3 231 64.9
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.2e-63 247.3 231 64.9
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 4.4e-63 245.4 211 58.3
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 7.5e-63 244.6 231 66.2
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.7e-62 243.4 232 55.6
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.2e-62 243.0 231 63.6
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 6.3e-62 241.5 225 57.3
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.1e-61 238.8 231 55.8
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 5.4e-61 238.4 224 61.2
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 9.2e-61 237.7 231 53.7
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 9.2e-61 237.7 230 54.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 4.5e-60 235.3 230 53.9
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.7e-59 233.4 231 53.2
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.7e-59 233.4 232 53.0
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.9e-59 232.6 219 53.0
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 3.9e-59 232.3 228 52.2
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 6.6e-59 231.5 216 56.0
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.5e-58 230.3 229 53.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.9e-58 229.9 215 55.3
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 4.3e-58 228.8 216 55.6
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 7.3e-58 228.0 255 48.6
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 7.3e-58 228.0 225 51.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 7.3e-58 228.0 230 55.7
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 9.5e-58 227.6 253 51.8
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 9.5e-58 227.6 222 53.2
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 2.1e-57 226.5 231 64.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 3.6e-57 225.7 231 64.9
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 3.6e-57 225.7 229 51.5
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 3.6e-57 225.7 225 54.7
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.6e-57 225.7 211 53.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 4.7e-57 225.3 213 53.5
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 6.1e-57 224.9 268 48.5
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.4e-56 223.8 215 54.9
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.8e-56 223.4 226 52.7
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 4.0e-56 222.2 234 51.7
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.2e-56 221.9 230 52.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-55 220.3 226 51.8
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.0e-55 219.9 232 53.4
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 2.6e-55 219.5 223 60.5
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 3.4e-55 219.2 230 51.3
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.4e-55 219.2 230 60.4
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.4e-55 218.8 230 51.3
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 5.8e-55 218.4 226 54.4
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 7.5e-55 218.0 190 57.9
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.3e-54 217.2 214 53.3
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.3e-54 217.2 231 52.4
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.7e-54 216.9 209 52.6
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.9e-54 216.1 220 51.4
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 3.7e-54 215.7 213 52.6
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 4.9e-54 215.3 230 57.0
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.4e-54 214.9 230 51.3
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 6.4e-54 214.9 220 60.5
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.1e-53 214.2 230 53.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.1e-53 214.2 217 55.3
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.4e-53 213.0 199 55.8
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 3.2e-53 212.6 197 53.3
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 7.0e-53 211.5 211 51.2
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-52 210.3 230 50.4
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 2.0e-52 209.9 224 62.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.0e-52 209.9 220 52.3
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.0e-52 209.9 230 51.7
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.0e-52 209.9 230 50.0
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.0e-52 209.9 230 48.7
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.5e-52 209.1 230 49.1
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.5e-52 209.1 210 55.7
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 6.0e-52 208.4 230 49.1
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.0e-51 207.6 230 50.0
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.7e-51 206.8 230 50.0
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.7e-51 206.8 222 48.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 2.3e-51 206.5 211 49.8
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.3e-51 206.5 230 50.0
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 2.3e-51 206.5 217 48.8
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.0e-51 206.1 228 53.9
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 3.0e-51 206.1 206 53.4
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 3.9e-51 205.7 212 52.4
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 5.0e-51 205.3 230 49.6
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.0e-51 205.3 228 53.5
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.6e-51 204.9 216 50.5
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 8.6e-51 204.5 221 49.3
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 8.6e-51 204.5 214 50.5
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.1e-50 204.1 200 54.5
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.1e-50 204.1 225 52.4
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.9e-50 203.4 228 50.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.9e-50 203.4 197 54.3
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 4.3e-50 202.2 217 49.3
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 4.3e-50 202.2 233 48.1
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 5.6e-50 201.8 206 48.5
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 7.3e-50 201.4 154 63.6
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 7.3e-50 201.4 222 48.2
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 1.6e-49 200.3 215 50.7
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.6e-49 200.3 222 47.3
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.6e-49 200.3 201 52.2
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.6e-49 200.3 215 59.5
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 2.8e-49 199.5 195 51.3
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 4.7e-49 198.7 221 48.0
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.7e-49 198.7 214 49.5
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.0e-49 198.0 245 44.9
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 8.0e-49 198.0 245 46.9
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.4e-48 197.2 222 49.1
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.4e-48 197.2 214 49.5
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.4e-48 197.2 207 49.8
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 2.3e-48 196.4 198 52.0
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 4.0e-48 195.7 201 52.2
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.0e-48 195.7 149 62.4
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 5.2e-48 195.3 222 47.3
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 6.8e-48 194.9 223 49.3
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.0e-47 193.4 212 50.5
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 7.5e-47 191.4 231 48.1
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 3.7e-46 189.1 215 50.7
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.4e-46 188.3 207 47.8
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.9e-45 186.8 210 49.5
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-44 184.1 231 49.4
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 3.5e-44 182.6 231 48.5
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 4.6e-44 182.2 197 49.7
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.7e-43 180.3 236 47.5
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 8.6e-43 177.9 230 47.8
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.5e-42 177.2 217 48.4
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 9.5e-42 174.5 218 43.6
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.2e-41 174.1 130 62.3
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 2.8e-41 172.9 196 48.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.6e-41 172.6 201 45.8
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.7e-41 172.2 198 46.5
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 2.3e-40 169.9 198 44.4
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.2e-39 167.5 203 59.6
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.2e-39 167.5 231 41.6
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.5e-39 167.2 207 55.6
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 2.0e-39 166.8 269 36.4
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 3.4e-39 166.0 225 49.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 3.4e-39 166.0 201 44.3
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 4.4e-39 165.6 232 42.2
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.2e-38 163.3 204 45.1
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 2.9e-38 162.9 225 49.3
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.4e-37 160.6 151 53.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.4e-37 160.6 218 40.8
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.4e-37 159.8 214 44.9
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.4e-37 159.8 214 44.9
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.6e-36 157.1 141 53.9
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 7.8e-36 154.8 230 38.7
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 5.1e-35 152.1 206 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.3e-34 149.4 211 42.2
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 9.5e-34 147.9 221 38.9
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-33 147.1 221 38.9
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 8.9e-32 141.4 231 46.3
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 9.9e-31 137.9 141 50.4
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 3.8e-30 136.0 146 63.0
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 8.7e-27 124.8 211 37.9
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.3e-26 122.5 143 46.2
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 4.8e-25 119.0 165 40.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 7.6e-23 111.7 148 42.6
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.7e-22 110.5 181 37.0
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.2e-22 110.2 116 50.0
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-19 100.5 218 31.2
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 6.6e-19 98.6 219 31.5
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 6.6e-19 98.6 145 40.0
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.5e-18 96.7 144 38.9
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 3.1e-16 89.7 87 57.5
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.4e-13 80.9 67 56.7
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.0e-11 74.7 110 38.2
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.3e-11 74.3 159 30.8
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.1e-09 67.0 67 52.2
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 8.1e-09 65.1 60 50.0
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.6e-07 60.1 33 78.8
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 5.8e-07 58.9 33 75.8
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 7.6e-07 58.5 36 77.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 6.4e-06 55.5 114 33.3


User provided reference genes

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