Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 1.2e-156 556.6 303 100.0
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 7.9e-137 490.7 308 88.6
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 2.3e-136 489.2 302 88.7
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 3.0e-136 488.8 308 87.7
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 5.1e-136 488.0 302 86.4
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 2.5e-135 485.7 302 86.4
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 6.1e-129 464.5 265 92.5
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.0e-128 462.2 265 92.1
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 3.1e-125 452.2 302 82.5
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 2.3e-120 436.0 268 85.4
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 3.0e-120 435.6 265 87.2
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.2e-120 434.9 265 85.7
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 5.2e-120 434.9 268 85.4
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 6.7e-120 434.5 293 80.2
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 8.8e-120 434.1 265 86.8
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 1.1e-119 433.7 264 86.7
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 1.5e-119 433.3 265 86.8
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 5.7e-119 431.4 265 86.4
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 9.7e-119 430.6 261 87.4
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 1.3e-118 430.3 266 86.5
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 1.7e-118 429.9 265 86.0
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 2.2e-118 429.5 278 83.8
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 2.2e-118 429.5 266 86.5
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 2.8e-118 429.1 265 86.8
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 3.7e-118 428.7 265 85.7
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 6.3e-118 427.9 265 87.2
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 1.1e-117 427.2 265 83.8
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 1.4e-117 426.8 265 85.7
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 1.8e-117 426.4 265 84.5
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 1.8e-117 426.4 265 84.5
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 3.1e-117 425.6 265 84.9
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 4.1e-117 425.2 265 84.5
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 5.3e-117 424.9 261 85.8
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 1.6e-116 423.3 265 84.2
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 2.0e-116 422.9 265 85.3
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 2.6e-116 422.5 268 82.5
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 4.5e-116 421.8 271 82.7
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 4.5e-116 421.8 266 83.5
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.3e-115 420.2 263 85.2
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 1.7e-115 419.9 265 83.4
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 1.7e-115 419.9 293 77.5
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 3.8e-115 418.7 258 86.0
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 6.5e-115 417.9 263 83.7
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 1.1e-114 417.2 265 83.8
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 1.1e-114 417.2 265 81.5
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 1.1e-114 417.2 267 82.0
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 1.5e-114 416.8 264 82.2
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 1.9e-114 416.4 264 83.0
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 1.9e-114 416.4 263 83.3
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 1.9e-114 416.4 265 81.5
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 4.2e-114 415.2 265 82.6
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 5.5e-114 414.8 262 83.6
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 5.5e-114 414.8 262 83.6
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 7.2e-114 414.5 265 83.8
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 1.2e-113 413.7 266 82.3
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 1.6e-113 413.3 263 83.3
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 1.6e-113 413.3 262 82.1
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 2.1e-113 412.9 253 87.7
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 2.7e-113 412.5 265 81.5
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 3.6e-113 412.1 265 81.1
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 4.7e-113 411.8 259 82.6
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 4.7e-113 411.8 259 82.6
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 4.7e-113 411.8 264 82.2
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 4.7e-113 411.8 265 81.1
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 4.7e-113 411.8 263 81.7
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 4.7e-113 411.8 263 82.5
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 6.1e-113 411.4 259 82.6
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 8.0e-113 411.0 264 81.4
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 1.0e-112 410.6 265 81.9
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 1.4e-112 410.2 253 86.6
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 1.8e-112 409.8 264 81.1
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 2.3e-112 409.5 264 81.1
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 2.3e-112 409.5 263 82.5
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 2.3e-112 409.5 263 81.7
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 4.0e-112 408.7 259 82.2
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 4.0e-112 408.7 259 82.2
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 1.5e-111 406.8 265 80.4
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 2.6e-111 406.0 258 82.6
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 5.7e-111 404.8 262 80.9
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 9.7e-111 404.1 263 81.0
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 9.7e-111 404.1 278 79.9
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 3.7e-110 402.1 253 84.6
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 4.8e-110 401.7 262 80.2
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 4.8e-110 401.7 262 80.5
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 6.3e-110 401.4 262 80.2
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 8.2e-110 401.0 265 80.8
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 3.1e-109 399.1 260 80.0
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 3.1e-109 399.1 260 80.0
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 2.0e-108 396.4 241 87.1
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 2.0e-108 396.4 266 79.7
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 7.7e-108 394.4 251 82.5
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 5.0e-107 391.7 266 78.2
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 5.0e-107 391.7 262 79.0
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 5.0e-107 391.7 258 80.2
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 8.5e-107 391.0 258 79.8
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 1.9e-106 389.8 261 79.7
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 3.2e-106 389.0 287 76.0
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 9.4e-106 387.5 225 90.2
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.2e-105 387.1 253 81.0
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 1.6e-105 386.7 269 75.5
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 4.7e-105 385.2 287 75.6
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 3.0e-104 382.5 272 73.9
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 3.4e-103 379.0 238 84.0
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 3.7e-102 375.6 270 73.3
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 1.4e-101 373.6 225 86.7
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 1.8e-101 373.2 265 75.1
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.2e-100 370.5 267 71.2
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 1.5e-98 363.6 276 69.6
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 2.1e-97 359.8 267 70.0
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 1.8e-96 356.7 265 75.5
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 1.2e-95 354.0 256 71.9
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 2.7e-92 342.8 257 68.9
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 7.3e-90 334.7 258 68.2
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 4.0e-88 328.9 187 92.5
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 1.5e-87 327.0 265 69.4
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 4.1e-85 318.9 252 68.7
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-67 259.2 254 54.3
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.1e-66 257.7 179 74.9
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 2.5e-66 256.5 265 59.2
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 4.3e-66 255.8 152 88.2
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.1e-61 241.1 161 80.7
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.0e-59 233.0 154 81.8
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 6.6e-51 205.3 245 45.3
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 8.7e-51 204.9 265 49.8
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 6.4e-46 188.7 246 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 1.8e-40 170.6 234 41.9
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 2.1e-33 147.1 240 36.7
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.8e-33 146.7 98 74.5
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.8e-32 144.1 96 80.2
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 3.1e-32 143.3 118 69.5
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 4.0e-32 142.9 77 96.1
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.9e-29 134.0 75 92.0
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 2.8e-25 120.2 233 36.5
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 1.2e-23 114.8 100 65.0
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 3.9e-11 73.2 75 60.0


User provided reference genes

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