Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 7.6e-135 483.8 239 100.0
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 1.7e-105 386.3 260 77.7
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 8.0e-92 340.9 259 71.0
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 1.0e-91 340.5 269 69.9
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 4.8e-89 331.6 259 68.0
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 3.5e-87 325.5 256 67.6
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 1.3e-86 323.6 256 66.4
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 3.8e-86 322.0 258 65.5
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.1e-85 320.5 259 64.1
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 2.5e-85 319.3 259 64.5
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 3.3e-85 318.9 197 80.7
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 7.2e-85 317.8 258 66.7
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 7.2e-85 317.8 258 63.6
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 3.6e-84 315.5 188 82.4
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 4.7e-84 315.1 260 64.6
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 2.3e-83 312.8 258 66.3
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 2.3e-83 312.8 253 64.4
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 4.0e-83 312.0 254 66.1
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 5.2e-83 311.6 256 65.2
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 6.8e-83 311.2 256 62.1
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 1.7e-81 306.6 256 62.9
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 1.7e-81 306.6 257 62.6
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 2.2e-81 306.2 254 63.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 1.1e-80 303.9 258 63.2
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 1.4e-80 303.5 257 61.5
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 3.1e-80 302.4 257 61.9
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 7.0e-80 301.2 257 61.9
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 2.0e-79 299.7 258 62.8
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 7.8e-79 297.7 264 61.0
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 1.0e-78 297.4 258 62.4
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 2.3e-78 296.2 193 75.6
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 5.0e-78 295.0 260 59.6
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 6.6e-78 294.7 251 60.6
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 6.6e-78 294.7 183 78.1
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.9e-77 293.1 257 61.5
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 3.3e-77 292.4 262 59.9
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 7.3e-77 291.2 267 59.9
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 2.1e-76 289.7 254 60.6
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 3.6e-76 288.9 248 61.7
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 4.7e-76 288.5 191 73.8
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 5.2e-75 285.0 214 65.9
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 6.8e-75 284.6 183 74.3
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 8.9e-75 284.3 188 72.3
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.5e-74 283.5 257 59.1
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 2.0e-74 283.1 262 59.9
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 5.8e-74 281.6 261 58.2
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 9.8e-74 280.8 191 72.3
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 2.2e-73 279.6 262 59.2
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 4.9e-73 278.5 261 57.1
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 6.4e-73 278.1 257 58.4
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 8.3e-73 277.7 221 69.2
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.8e-72 276.6 259 57.9
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 2.4e-72 276.2 256 60.2
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 2.4e-72 276.2 259 58.3
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 4.1e-72 275.4 258 58.5
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 5.4e-72 275.0 207 67.6
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 5.4e-72 275.0 189 69.8
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 7.0e-72 274.6 256 58.6
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 9.2e-72 274.2 208 66.8
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.2e-71 273.9 207 67.1
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 2.7e-71 272.7 256 57.0
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 2.7e-71 272.7 205 67.3
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 3.5e-71 272.3 256 59.4
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 3.5e-71 272.3 256 59.4
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 4.6e-71 271.9 248 58.5
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 3.9e-70 268.9 259 57.5
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 5.0e-70 268.5 257 56.4
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 8.6e-70 267.7 241 58.5
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 1.2e-68 263.8 184 68.5
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.2e-68 263.8 184 68.5
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 1.1e-67 260.8 200 65.5
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 2.3e-67 259.6 174 71.3
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 3.1e-67 259.2 207 64.7
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 4.4e-66 255.4 198 64.6
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 1.3e-65 253.8 171 72.5
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 1.7e-65 253.4 266 56.0
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 2.9e-65 252.7 200 63.0
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 6.4e-65 251.5 212 58.0
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 9.2e-64 247.7 203 59.6
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 7.8e-63 244.6 162 73.5
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.7e-62 243.4 232 56.0
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.7e-62 243.4 187 62.0
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.3e-59 233.0 172 61.6
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 2.3e-59 233.0 241 51.9
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 6.6e-54 214.9 201 60.2
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 7.3e-53 211.5 136 76.5
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 9.5e-53 211.1 223 52.9
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 5.2e-51 205.3 109 88.1
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 2.0e-50 203.4 160 63.8
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 4.4e-50 202.2 109 84.4
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 1.3e-49 200.7 205 56.1
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 6.4e-49 198.4 110 79.1
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 6.0e-47 191.8 108 80.6
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 5.2e-43 178.7 96 84.4
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 2.6e-42 176.4 261 38.3
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 1.3e-41 174.1 190 53.7
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.2e-39 167.5 166 51.2
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 6.6e-38 161.8 186 52.2
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 2.1e-36 156.8 93 77.4
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 1.1e-35 154.5 159 47.2
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 1.2e-31 141.0 83 74.7
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.6e-31 140.6 99 63.6
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.2e-26 124.4 73 68.5
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 6.4e-25 118.6 122 54.1
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.8e-20 103.2 77 64.9
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.2e-18 97.8 233 33.0
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.0e-18 97.1 53 79.2
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 1.0e-14 84.7 117 48.7
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 6.7e-14 82.0 59 61.0
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 1.9e-13 80.5 114 47.4
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 3.3e-13 79.7 184 29.9
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 9.7e-13 78.2 123 45.5
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 2.2e-12 77.0 71 52.1
EL10Ac7g17323 Beta vulgaris HOM05D007024 ORTHO05D008865 5.3e-11 72.4 38 78.9
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 6.9e-11 72.0 202 29.7
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.5e-10 70.9 262 27.1
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.6e-10 70.1 202 29.2
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 5.9e-10 68.9 202 29.2
RcHm_v2.0_Chr4g0422601 Rosa chinensis HOM05D007024 ORTHO05D008865 6.5e-09 65.5 29 96.6
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.2e-07 61.2 193 26.4
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 1.0e-06 58.2 169 30.2
Hma1.2p1_1348F.1_g277280 Hydrangea macrophylla HOM05D006847 ORTHO05D008685 1.8e-06 57.4 159 28.9
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 3.9e-06 56.2 207 27.5
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 5.1e-06 55.8 34 64.7
Medtr0328s0040 Medicago truncatula HOM05D006847 ORTHO05D008685 5.1e-06 55.8 171 25.7
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 5.1e-06 55.8 169 29.6
TPR.G20006 Trifolium pratense HOM05D006847 ORTHO05D008685 6.7e-06 55.5 171 26.9


User provided reference genes

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