Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 0.0e+00 1239.6 823 100.0
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 2.5e-302 1042.0 831 81.9
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 7.3e-286 987.3 826 78.5
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 5.3e-276 954.5 828 77.1
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.0e-275 952.6 833 76.8
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.2e-274 949.1 833 83.2
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 6.4e-274 947.6 831 77.3
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 7.7e-211 738.0 857 62.5
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 8.3e-205 718.0 852 61.4
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 8.6e-202 708.0 857 60.8
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 1.9e-201 706.8 853 67.6
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 9.5e-201 704.5 861 62.0
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 2.6e-198 696.4 786 62.8
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 3.4e-198 696.0 859 59.7
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 4.9e-197 692.2 864 60.8
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.4e-196 689.9 858 59.6
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 5.4e-196 688.7 879 61.3
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 5.4e-196 688.7 854 59.8
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 6.2e-192 675.2 853 62.8
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.6e-187 660.6 860 60.5
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 2.7e-187 659.8 861 58.5
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.3e-186 657.5 849 60.0
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 3.9e-186 656.0 842 60.3
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.5e-185 654.1 861 65.9
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.5e-182 644.0 857 57.6
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 2.6e-182 643.3 860 58.7
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 9.8e-182 641.3 860 64.3
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.0e-178 631.3 866 56.6
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 8.1e-176 621.7 847 58.2
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 5.2e-175 619.0 862 56.0
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.2e-173 613.6 747 61.7
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 8.4e-173 611.7 867 48.7
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 7.1e-172 608.6 835 57.7
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 2.7e-171 606.7 847 57.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 3.5e-171 606.3 861 55.1
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 1.0e-170 604.7 668 64.5
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 3.9e-170 602.8 871 49.7
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 5.1e-170 602.4 861 55.2
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 5.1e-170 602.4 864 55.3
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 5.1e-170 602.4 864 55.3
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 6.6e-170 602.1 853 53.9
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 1.1e-169 601.3 668 63.0
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 4.3e-169 599.4 670 64.8
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 9.6e-169 598.2 797 56.8
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.2e-168 597.8 860 56.4
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 1.6e-168 597.4 699 64.4
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 8.1e-168 595.1 816 55.9
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 8.1e-168 595.1 816 55.9
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 7.6e-166 588.6 799 57.8
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 3.8e-165 586.3 795 57.1
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 6.4e-165 585.5 704 53.6
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 6.4e-165 585.5 704 53.6
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.1e-164 584.7 670 64.2
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 2.4e-164 583.6 672 63.5
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 4.2e-164 582.8 870 54.6
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 1.2e-163 581.3 862 54.5
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 1.7e-162 577.4 868 53.3
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 1.9e-161 573.9 881 60.5
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 2.5e-161 573.5 884 60.4
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 5.6e-161 572.4 854 54.4
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.6e-160 570.9 819 50.8
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 1.6e-160 570.9 859 53.6
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 3.6e-160 569.7 859 53.4
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 4.8e-160 569.3 872 47.0
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 1.8e-159 567.4 846 53.9
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 2.6e-158 563.5 774 56.3
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 5.8e-158 562.4 829 51.7
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 7.6e-158 562.0 873 46.8
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.3e-157 561.2 831 49.5
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 3.8e-157 559.7 850 54.7
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 6.4e-157 558.9 860 53.7
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 5.4e-156 555.8 794 49.2
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 9.3e-156 555.1 837 53.5
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 4.6e-155 552.7 804 55.3
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 7.9e-155 552.0 856 53.9
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 2.3e-154 550.4 784 55.9
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 6.9e-151 538.9 668 61.2
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.6e-150 537.0 845 53.0
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 1.4e-148 531.2 758 55.9
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 2.8e-144 516.9 677 61.4
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.4e-143 514.6 771 45.8
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 3.1e-143 513.5 874 46.0
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 4.0e-143 513.1 848 49.5
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 1.8e-135 487.6 828 52.1
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 8.5e-133 478.8 596 66.8
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 5.9e-118 429.5 735 50.9
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 1.7e-117 427.9 810 41.1
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 1.6e-107 394.8 521 64.7
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 1.7e-96 358.2 840 43.2
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 4.4e-89 333.6 629 35.5
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 2.4e-87 327.8 561 48.3
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.2e-83 315.5 342 66.1
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 1.2e-78 298.9 282 74.5
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 8.0e-75 286.2 537 55.1
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.7e-64 250.8 828 40.0
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.0e-61 241.1 816 40.7
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 4.3e-60 237.3 698 40.7
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 2.8e-51 208.0 230 52.6
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 6.9e-50 203.4 235 48.9
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 8.4e-48 196.4 253 44.7
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 7.9e-38 163.3 314 49.4
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 9.0e-34 149.8 371 38.3
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.2e-25 122.9 74 82.4
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.0e-21 109.8 192 34.9
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 1.9e-20 105.5 120 45.0
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.1e-12 79.7 157 33.1
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 1.7e-11 75.9 75 53.3
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 1.2e-09 69.7 161 58.4
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 1.6e-06 59.3 181 26.0


User provided reference genes

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