Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G240500 Prunus persica HOM05D007569 ORTHO05D009268 1.8e-51 205.7 107 100.0
MD04G1102400 Malus domestica HOM05D007569 ORTHO05D009268 9.0e-27 123.6 91 70.3
Potri.006G130400 Populus trichocarpa HOM05D007569 ORTHO05D009268 1.3e-20 103.2 91 60.4
QL07p045078 Quercus lobata HOM05D007569 ORTHO05D009268 1.2e-18 96.7 89 56.2
Potri.016G087000 Populus trichocarpa HOM05D007569 ORTHO05D009268 1.5e-18 96.3 91 57.1
Sabra16G0093200 Salix brachista HOM05D007569 ORTHO05D009268 2.4e-16 89.0 92 55.4
CANSAT80G1933 Cannabis sativa HOM05D007569 ORTHO05D009268 4.2e-16 88.2 92 46.7
RcHm_v2.0_Chr3g0469031 Rosa chinensis HOM05D007569 ORTHO05D009268 4.2e-16 88.2 98 57.1
Ciclev10013224m.g Citrus clementina HOM05D007569 ORTHO05D009268 5.5e-16 87.8 93 59.1
MD12G1122100 Malus domestica HOM05D007569 ORTHO05D009268 1.2e-15 86.7 61 70.5
FAN05G3967 Fragaria x ananassa HOM05D007569 ORTHO05D009268 2.1e-15 85.9 100 53.0
Dinv35729 Davidia involucrata HOM05D007569 ORTHO05D009268 2.7e-15 85.5 92 54.3
Haze_20627 Corylus avellana HOM05D007569 ORTHO05D009268 1.0e-14 83.6 92 56.5
Cpa.g.sc368.3 Carica papaya HOM05D007569 ORTHO05D009268 1.3e-14 83.2 92 53.3
CiPaw.09G178900 Carya illinoinensis HOM05D007569 ORTHO05D009268 1.3e-14 83.2 96 59.4
FvH4_6g15530 Fragaria vesca HOM05D007569 ORTHO05D009268 6.7e-14 80.9 97 53.6
FAN14G4266 Fragaria x ananassa HOM05D007569 ORTHO05D009268 6.7e-14 80.9 97 53.6
CiPaw.10G136400 Carya illinoinensis HOM05D007569 ORTHO05D009268 8.7e-14 80.5 92 56.5
CiPaw.10G136600 Carya illinoinensis HOM05D007569 ORTHO05D009268 8.7e-14 80.5 92 56.5
Aqoxy4G03229 Aquilegia oxysepala HOM05D007569 ORTHO05D009268 1.5e-13 79.7 86 53.5
CSS0032625 Camellia sinensis var. sinensis HOM05D007569 ORTHO05D009268 1.5e-13 79.7 95 53.7
Sabra06G0102400 Salix brachista HOM05D007569 ORTHO05D009268 3.3e-13 78.6 92 50.0
Actinidia19698 Actinidia chinensis HOM05D007569 ORTHO05D009268 2.8e-12 75.5 92 51.1
Thecc.05G055900 Theobroma cacao HOM05D007569 ORTHO05D009268 6.2e-12 74.3 89 55.1
Duzib093G0005 Durio zibethinus HOM05D007569 ORTHO05D009268 8.2e-12 73.9 84 56.0
COL.COLO4_27060 Corchorus olitorius HOM05D007569 ORTHO05D009268 1.8e-11 72.8 89 52.8
Oeu026850.1 Olea europaea HOM05D007569 ORTHO05D009268 1.8e-11 72.8 93 48.4
Medtr7g100860 Medicago truncatula HOM05D007569 ORTHO05D009268 2.4e-11 72.4 96 46.9
GSVIVG01025645001 Vitis vinifera HOM05D007569 ORTHO05D009268 5.3e-11 71.2 83 50.6
Cc06_g03690 Coffea canephora HOM05D007569 ORTHO05D009268 9.0e-11 70.5 88 45.5
TAR623G1008 Trochodendron aralioides HOM05D007569 ORTHO05D009268 9.0e-11 70.5 89 50.6
FAN02G0921 Fragaria x ananassa HOM05D000214 ORTHO05D009268 1.2e-10 70.1 66 59.1
Manes.08G004500 Manihot esculenta HOM05D007569 ORTHO05D009268 1.5e-10 69.7 91 47.3
AL6G12400 Arabidopsis lyrata HOM05D007569 ORTHO05D009268 2.6e-10 68.9 65 55.4
Sp6g39590 Schrenkiella parvula HOM05D007569 ORTHO05D009268 2.6e-10 68.9 66 56.1
AT5G03120 Arabidopsis thaliana HOM05D007569 ORTHO05D009268 3.4e-10 68.6 68 51.5
CARHR210230 Cardamine hirsuta HOM05D007569 ORTHO05D009268 5.8e-10 67.8 65 55.4
Thhalv10015759m.g Eutrema salsugineum HOM05D007569 ORTHO05D009268 7.6e-10 67.4 66 56.1
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 1.0e-09 67.0 77 49.4
Gohir.A13G025100 Gossypium hirsutum HOM05D007569 ORTHO05D009268 1.7e-09 66.2 104 43.3
Nn2g13029 Nelumbo nucifera HOM05D007569 ORTHO05D009268 1.7e-09 66.2 85 45.9
A03p01020 Brassica napus HOM05D007569 ORTHO05D009268 2.2e-09 65.9 66 53.0
BraA03t09483Z Brassica rapa HOM05D007569 ORTHO05D009268 2.2e-09 65.9 66 53.0
Carub.0006s0192 Capsella rubella HOM05D007569 ORTHO05D009268 2.2e-09 65.9 69 49.3
Gorai.013G026900 Gossypium raimondii HOM05D007569 ORTHO05D009268 2.9e-09 65.5 112 37.5
Peaxi162Scf00005g00394 Petunia axillaris HOM05D007569 ORTHO05D009268 2.9e-09 65.5 93 43.0
Lj5g0021553 Lotus japonicus HOM05D007569 ORTHO05D009268 4.9e-09 64.7 82 40.2
Psat3g044160 Pisum sativum HOM05D007569 ORTHO05D009268 4.9e-09 64.7 42 64.3
Lalb_Chr25g0289201 Lupinus albus HOM05D007569 ORTHO05D009268 1.1e-08 63.5 54 55.6
Glyma.10G050600 Glycine max HOM05D007569 ORTHO05D009268 1.4e-08 63.2 80 50.0
Peaxi162Scf00472g00312 Petunia axillaris HOM05D007569 ORTHO05D009268 1.4e-08 63.2 92 42.4
BcaB05g21850 Brassica carinata HOM05D007569 ORTHO05D009268 1.9e-08 62.8 66 53.0
Gohir.A01G216400 Gossypium hirsutum HOM05D007569 ORTHO05D009268 1.9e-08 62.8 66 53.0
RhsimUnG0115600 Rhododendron simsii HOM05D007569 ORTHO05D009268 2.5e-08 62.4 91 49.5
Gohir.D13G023800 Gossypium hirsutum HOM05D007569 ORTHO05D009268 4.2e-08 61.6 112 36.6
Nitab4.5_0003871g0030 Nicotiana tabacum HOM05D007569 ORTHO05D009268 4.2e-08 61.6 92 42.4
Actinidia05265 Actinidia chinensis HOM05D007569 ORTHO05D009268 5.5e-08 61.2 91 45.1
Aa31LG1G21950 Aethionema arabicum HOM05D007569 ORTHO05D009268 5.5e-08 61.2 71 47.9
BcaC03g13030 Brassica carinata HOM05D007569 ORTHO05D009268 5.5e-08 61.2 64 50.0
C02p00800 Brassica napus HOM05D004310 ORTHO05D009268 5.5e-08 61.2 64 50.0
BraA02t04745Z Brassica rapa HOM05D007569 ORTHO05D009268 5.5e-08 61.2 64 50.0
Eucgr.A01170 Eucalyptus grandis HOM05D007569 ORTHO05D009268 5.5e-08 61.2 64 50.0
Nn2g10705 Nelumbo nucifera HOM05D007569 ORTHO05D009268 5.5e-08 61.2 94 46.8
TWI74G0066 Tripterygium wilfordii HOM05D007569 ORTHO05D009268 5.5e-08 61.2 96 46.9
BcaB01g05860 Brassica carinata HOM05D007569 ORTHO05D009268 7.1e-08 60.8 77 48.1
C03p01310 Brassica napus HOM05D007569 ORTHO05D009268 7.1e-08 60.8 77 48.1
BolC3t12690H Brassica oleracea HOM05D007569 ORTHO05D009268 7.1e-08 60.8 77 48.1
Glyma.13G138100 Glycine max HOM05D007569 ORTHO05D009268 7.1e-08 60.8 98 45.9
Manes.09G078021 Manihot esculenta HOM05D007569 ORTHO05D009268 7.1e-08 60.8 92 44.6
Migut.L01668 Erythranthe guttata HOM05D007569 ORTHO05D009268 9.3e-08 60.5 79 45.6
Lsat_1_v5_gn_6_30260 Lactuca sativa HOM05D007569 ORTHO05D009268 9.3e-08 60.5 99 41.4
Lalb_Chr01g0018971 Lupinus albus HOM05D007569 ORTHO05D009268 9.3e-08 60.5 59 49.2
ClCG04G008870 Citrullus lanatus HOM05D031093 ORTHO05D009268 1.2e-07 60.1 101 43.6
Gorai.002G249500 Gossypium raimondii HOM05D007569 ORTHO05D009268 1.6e-07 59.7 66 50.0
Solyc10g150149.1 Solanum lycopersicum HOM05D007569 ORTHO05D009268 2.1e-07 59.3 69 46.4
PGR004G0018 Punica granatum HOM05D007569 ORTHO05D009268 4.6e-07 58.2 98 43.9
PGSC0003DMG400001743 Solanum tuberosum HOM05D007569 ORTHO05D009268 4.6e-07 58.2 94 45.7
EL10Ac7g16512 Beta vulgaris HOM05D007569 ORTHO05D009268 6.0e-07 57.8 68 48.5
Gohir.D01G205200 Gossypium hirsutum HOM05D007569 ORTHO05D009268 6.0e-07 57.8 72 43.1
THA.LOC104826977 Tarenaya hassleriana HOM05D007569 ORTHO05D009268 7.9e-07 57.4 70 48.6
Medtr1g066720 Medicago truncatula HOM05D007569 ORTHO05D009268 1.0e-06 57.0 73 43.8
Oeu060096.1 Olea europaea HOM05D007569 ORTHO05D009268 2.3e-06 55.8 75 46.7
BolC2t06078H Brassica oleracea HOM05D004310 ORTHO05D009268 3.0e-06 55.5 73 43.8
Nitab4.5_0008568g0070 Nicotiana tabacum HOM05D007569 ORTHO05D009268 3.0e-06 55.5 85 41.2
TPR.G28044 Trifolium pratense HOM05D007569 ORTHO05D009268 3.0e-06 55.5 85 41.2
Lsat_1_v5_gn_1_54200 Lactuca sativa HOM05D007569 ORTHO05D009268 3.9e-06 55.1 79 41.8
Nitab4.5_0006156g0030 Nicotiana tabacum HOM05D007569 ORTHO05D009268 3.9e-06 55.1 100 37.0
Sc07g0006270 Simmondsia chinensis HOM05D007569 ORTHO05D009268 5.1e-06 54.7 56 50.0
ATR0709G015 Amborella trichopoda HOM05D007569 ORTHO05D009268 6.7e-06 54.3 54 53.7
PGR142G4405 Punica granatum HOM05D007569 ORTHO05D009268 6.7e-06 54.3 80 43.8
Sed0009226 Sechium edule HOM05D031093 ORTHO05D009268 6.7e-06 54.3 100 46.0
CsaV3_6G039370 Cucumis sativus L. HOM05D031093 ORTHO05D009268 8.7e-06 53.9 86 45.3


User provided reference genes

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