Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 1.9e-226 788.9 418 100.0
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 3.7e-108 396.0 428 58.2
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 4.3e-101 372.5 455 53.4
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 9.0e-99 364.8 442 54.1
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 4.2e-96 355.9 398 58.5
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 3.6e-95 352.8 433 53.1
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 2.2e-92 343.6 259 75.7
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 6.9e-91 338.6 443 51.5
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 2.0e-90 337.0 447 52.6
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 2.6e-85 320.1 451 49.9
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 2.2e-81 307.0 430 50.0
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 1.9e-80 303.9 441 48.8
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 2.7e-79 300.1 457 46.8
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 4.7e-79 299.3 434 49.5
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 2.3e-78 297.0 429 52.0
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.0e-77 293.9 391 50.6
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 1.7e-76 290.8 423 50.4
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 1.8e-75 287.3 425 49.2
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 4.1e-75 286.2 425 48.9
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 4.1e-75 286.2 434 48.8
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 5.3e-75 285.8 447 45.9
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 2.2e-73 280.4 457 45.3
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 2.9e-73 280.0 394 49.0
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 5.0e-73 279.3 431 45.2
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 3.6e-71 273.1 435 44.8
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 3.0e-70 270.0 433 46.2
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 1.2e-69 268.1 418 45.7
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 1.5e-69 267.7 418 45.9
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 3.3e-69 266.5 389 48.1
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 3.7e-68 263.1 411 46.0
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 8.2e-68 261.9 282 55.3
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-67 261.5 427 44.7
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 1.4e-67 261.2 485 41.0
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 3.1e-67 260.0 418 44.7
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.6e-63 247.7 468 42.9
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 1.0e-62 245.0 429 42.9
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 8.8e-62 241.9 429 43.6
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 1.1e-59 235.0 375 45.9
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 1.1e-59 235.0 378 46.0
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 1.4e-59 234.6 434 42.4
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 3.1e-59 233.4 431 43.2
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 1.6e-58 231.1 443 43.1
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 3.5e-58 229.9 422 42.9
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 5.9e-58 229.2 485 40.6
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 1.3e-57 228.0 434 41.2
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 1.3e-57 228.0 369 45.5
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 1.7e-57 227.6 424 44.1
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 5.0e-57 226.1 369 45.5
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 6.5e-57 225.7 455 38.7
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 3.3e-56 223.4 407 41.8
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 4.7e-55 219.5 397 42.6
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 1.8e-54 217.6 395 42.5
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-52 211.1 417 41.2
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 4.9e-52 209.5 423 40.9
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 6.3e-52 209.1 427 41.2
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 4.1e-51 206.5 438 38.8
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 9.2e-51 205.3 430 37.9
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 2.7e-50 203.8 412 39.6
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 4.5e-50 203.0 388 41.2
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 3.8e-49 199.9 421 40.9
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 1.5e-48 198.0 436 38.3
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 2.5e-48 197.2 441 39.2
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 3.3e-48 196.8 434 40.1
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 4.3e-48 196.4 325 46.2
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 1.2e-47 194.9 414 39.6
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 1.6e-47 194.5 423 38.8
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 6.1e-47 192.6 299 46.8
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 1.0e-46 191.8 263 50.2
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 1.4e-46 191.4 441 38.5
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 8.9e-46 188.7 432 39.8
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 4.4e-45 186.4 441 38.3
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 4.4e-45 186.4 429 38.5
MD04G1102800 Malus domestica HOM05D007360 ORTHO05D008235 4.9e-44 183.0 162 67.3
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 8.3e-44 182.2 443 38.4
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 7.0e-43 179.1 440 38.6
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 2.7e-42 177.2 429 38.5
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 1.0e-41 175.3 413 38.0
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 1.1e-40 171.8 430 35.6
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 4.3e-40 169.9 397 36.5
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 7.3e-40 169.1 331 42.9
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 2.8e-39 167.2 260 44.6
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 4.7e-39 166.4 255 46.3
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 8.0e-39 165.6 433 36.7
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 1.1e-38 165.2 301 43.2
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 1.4e-38 164.9 119 77.3
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 1.5e-37 161.4 295 42.7
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 3.4e-37 160.2 435 35.9
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 4.1e-35 153.3 521 33.2
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 7.8e-34 149.1 319 37.9
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 5.6e-32 142.9 353 38.2
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 2.8e-31 140.6 236 41.1
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 3.9e-25 120.2 369 34.7
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 7.3e-24 115.9 88 69.3
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 5.8e-21 106.3 259 37.5
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 1.1e-19 102.1 294 34.7
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 6.4e-12 76.3 249 30.1
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 3.2e-11 73.9 103 39.8
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 2.1e-10 71.2 246 29.3
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 4.6e-10 70.1 53 69.8
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 7.8e-10 69.3 302 29.5
RcHm_v2.0_Chr6g0299451 Rosa chinensis HOM05D005497 ORTHO05D006733 6.6e-09 66.2 240 28.3
Actinidia10518 Actinidia chinensis HOM05D005497 ORTHO05D006733 4.3e-08 63.5 323 26.6
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 9.6e-08 62.4 253 29.2
FAN27G2527 Fragaria x ananassa HOM05D005497 ORTHO05D006733 2.1e-07 61.2 243 28.8
FAN05G5083 Fragaria x ananassa HOM05D005497 ORTHO05D006733 3.6e-07 60.5 230 29.6
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 3.6e-07 60.5 134 37.3
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.6e-07 60.5 238 26.1
Actinidia04644 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.2e-07 59.7 49 65.3
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 6.2e-07 59.7 49 65.3
Actinidia28468 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.2e-07 59.7 49 65.3
Actinidia33720 Actinidia chinensis HOM05D007360 ORTHO05D008235 6.2e-07 59.7 49 65.3
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.4e-06 58.5 240 27.5
FAN22G2245 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.8e-06 58.2 168 32.1
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 2.4e-06 57.8 250 25.6
Pp3c4_1590 Physcomitrium patens HOM05D018912 ORTHO05D021275 2.4e-06 57.8 249 26.1
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 3.1e-06 57.4 295 23.4
Pp3c12_23920 Physcomitrium patens HOM05D018912 ORTHO05D021275 3.1e-06 57.4 283 25.8
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 3.1e-06 57.4 239 25.5
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 5.3e-06 56.6 268 23.9
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 5.3e-06 56.6 321 25.5
FAN23G0278 Fragaria x ananassa HOM05D005497 ORTHO05D006733 6.9e-06 56.2 130 35.4


User provided reference genes

Program Settings