Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.3e-260 902.5 462 100.0
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.6e-229 799.3 462 86.8
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 1.2e-189 666.8 459 76.0
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-188 663.7 463 75.2
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-185 651.7 469 73.8
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 3.6e-181 638.6 463 72.6
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 2.2e-170 602.8 462 70.1
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 5.7e-163 578.2 468 67.5
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.9e-162 575.1 470 66.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 6.4e-162 574.7 468 67.9
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 8.3e-162 574.3 474 66.2
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.8e-161 573.2 470 65.7
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.8e-161 573.2 469 67.0
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 2.4e-161 572.8 482 62.9
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 9.2e-161 570.9 462 63.9
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 7.8e-160 567.8 467 65.3
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 2.3e-159 566.2 465 64.3
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.9e-158 563.1 465 64.3
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 2.5e-158 562.8 477 64.4
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 7.3e-158 561.2 459 65.6
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 3.6e-157 558.9 464 63.6
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.8e-156 556.6 473 63.4
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.5e-155 553.5 462 63.2
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 5.8e-155 551.6 473 63.4
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 2.2e-154 549.7 491 61.3
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.2e-154 549.7 473 63.2
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.5e-152 542.3 465 63.2
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.3e-151 539.7 475 63.2
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 6.6e-151 538.1 466 59.7
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.4e-148 530.4 465 60.2
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.4e-148 530.4 463 62.0
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 4.4e-147 525.4 465 59.6
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 4.9e-146 521.9 453 62.3
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.1e-145 520.8 463 60.9
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.4e-145 519.6 469 61.0
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 4.1e-145 518.8 466 58.6
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 4.6e-144 515.4 467 59.5
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 3.9e-143 512.3 468 59.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 2.5e-142 509.6 482 61.2
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 2.5e-142 509.6 480 57.3
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 4.3e-142 508.8 462 59.1
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 6.2e-141 505.0 467 60.4
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 5.2e-140 501.9 483 56.9
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.0e-139 500.0 463 59.8
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 7.6e-139 498.0 463 60.3
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.9e-137 493.4 467 58.7
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 1.2e-136 490.7 467 58.7
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 2.1e-136 490.0 468 58.3
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.7e-135 486.9 453 60.0
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 8.6e-135 484.6 462 57.6
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 8.6e-135 484.6 457 57.5
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 8.6e-135 484.6 467 57.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 1.5e-134 483.8 474 56.8
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.5e-134 483.8 467 57.6
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.3e-134 482.6 463 57.7
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.3e-134 482.3 468 57.5
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.6e-134 481.9 467 57.4
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.2e-133 480.7 469 57.6
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.6e-133 480.3 468 58.1
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.1e-133 479.9 457 57.3
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.8e-133 479.6 459 57.1
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.7e-133 478.8 461 57.0
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 6.9e-132 474.9 462 56.7
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 1.2e-131 474.2 304 78.9
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.9e-130 469.5 461 56.0
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.8e-130 469.2 300 78.0
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.8e-130 469.2 300 78.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.9e-130 468.8 461 55.7
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 8.4e-130 468.0 469 55.2
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.4e-129 466.5 462 56.3
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 5.4e-129 465.3 468 54.7
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-128 463.4 358 71.2
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 3.5e-128 462.6 476 55.9
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 7.8e-128 461.5 462 54.8
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.3e-127 460.7 466 54.9
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 6.6e-127 458.4 469 54.6
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.9e-126 456.8 469 54.4
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 7.3e-126 454.9 469 54.6
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 9.6e-126 454.5 469 54.2
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 1.3e-125 454.1 456 55.5
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 6.9e-124 448.4 436 58.3
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.4e-121 440.7 424 58.0
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 4.6e-120 435.6 446 54.7
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 7.9e-120 434.9 458 52.8
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 3.3e-118 429.5 466 52.4
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 5.6e-118 428.7 599 43.6
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 6.9e-116 421.8 447 52.6
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 1.2e-115 421.0 456 50.9
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 7.6e-115 418.3 453 52.3
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 3.8e-114 416.0 467 51.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 6.4e-114 415.2 480 52.1
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.1e-113 414.5 432 52.5
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 2.4e-113 413.3 474 51.9
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 6.0e-112 408.7 511 47.9
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 7.9e-112 408.3 461 52.1
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 2.3e-111 406.8 453 48.8
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 5.1e-111 405.6 462 50.2
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 8.7e-111 404.8 436 51.6
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.9e-110 403.7 436 51.6
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.8e-109 399.8 459 49.7
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 2.4e-108 396.7 259 73.4
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 4.0e-108 396.0 427 51.8
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 2.0e-107 393.7 319 63.9
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 8.4e-106 388.3 444 50.7
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.2e-104 384.4 451 48.6
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.5e-104 382.9 461 46.2
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.8e-103 380.6 279 67.7
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 6.7e-103 378.6 455 47.0
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 8.7e-103 378.3 455 47.0
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.9e-102 377.1 579 42.1
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.1e-101 373.6 445 47.0
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 9.3e-97 358.2 434 46.5
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 7.9e-96 355.1 375 52.5
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.4e-92 344.4 252 69.4
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 5.5e-89 332.4 463 44.3
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.8e-85 320.1 456 43.4
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.4e-84 317.8 441 42.2
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 5.3e-84 315.8 436 42.9
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 9.1e-84 315.1 455 41.8
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 3.8e-82 309.7 254 61.4
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 6.3e-77 292.4 446 45.1
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 6.5e-74 282.3 425 42.6
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 3.6e-64 250.0 440 35.5
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 5.4e-60 236.1 424 36.1
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 7.2e-57 225.7 412 35.9
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.8e-53 213.8 237 55.3
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 3.3e-49 200.3 338 39.9
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 3.0e-47 193.7 457 31.9
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.5e-46 191.4 463 32.8
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.6e-46 190.7 189 61.9
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.3e-45 188.3 463 33.0
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 4.9e-45 186.4 141 67.4
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.1e-44 185.3 325 39.1
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-42 177.6 157 66.9
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.5e-41 174.1 108 76.9
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.1e-39 167.2 186 57.0
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 4.0e-39 166.8 443 31.4
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 6.4e-37 159.5 129 58.1
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.3e-34 151.8 209 38.8
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 1.9e-33 147.9 225 44.0
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 1.2e-32 145.2 225 44.0
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.5e-30 138.3 146 56.2
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 4.9e-29 133.3 234 43.6
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 6.4e-29 132.9 236 35.6
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 7.8e-27 125.9 438 26.9
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 8.6e-26 122.5 99 58.6
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.4e-23 114.4 230 33.0
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 2.6e-22 110.9 170 35.3
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-22 110.5 90 71.1
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.2e-21 107.8 90 70.0
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 9.2e-20 102.4 131 48.9
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-19 101.3 85 68.2
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.7e-19 100.9 76 72.4
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 8.7e-18 95.9 227 31.7
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.6e-16 90.5 229 28.4
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 4.7e-16 90.1 255 27.8
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 6.9e-15 86.3 125 45.6
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 6.9e-15 86.3 125 45.6
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 2.2e-13 81.3 89 56.2
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 2.3e-10 71.2 114 39.5
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 3.4e-06 57.4 94 46.8


User provided reference genes

Program Settings