Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 4.6e-166 587.8 295 100.0
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 4.0e-133 478.4 295 84.4
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.0e-124 449.5 292 81.2
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.0e-124 449.5 292 81.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.8e-123 445.7 292 80.5
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.8e-122 443.0 292 80.1
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 7.0e-122 441.0 299 79.6
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 4.0e-117 425.2 305 72.1
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 2.4e-114 416.0 300 72.3
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 6.1e-110 401.4 328 66.5
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.0e-109 400.6 301 71.4
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 4.0e-109 398.7 298 70.8
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 3.4e-108 395.6 305 69.5
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 4.4e-108 395.2 303 69.3
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 1.7e-107 393.3 303 68.6
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 1.9e-106 389.8 305 69.2
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.9e-106 389.8 298 69.8
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 9.2e-106 387.5 304 67.4
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.2e-105 387.1 294 69.0
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.7e-105 386.0 298 69.1
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 3.5e-105 385.6 298 69.5
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 2.3e-104 382.9 307 65.8
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 6.6e-104 381.3 303 65.7
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 2.5e-103 379.4 312 66.0
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.5e-103 379.4 291 69.8
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 7.3e-103 377.9 296 66.9
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 1.6e-102 376.7 294 68.0
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 2.1e-102 376.3 249 75.5
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 6.2e-102 374.8 301 68.4
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 8.0e-102 374.4 296 66.9
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 1.8e-101 373.2 295 66.1
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 4.0e-101 372.1 296 65.9
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 5.2e-101 371.7 299 66.9
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 6.8e-101 371.3 313 64.9
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 8.9e-101 370.9 299 66.2
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 1.5e-100 370.2 297 67.0
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 3.4e-100 369.0 299 66.9
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 9.8e-100 367.5 294 68.0
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.7e-99 366.7 224 79.5
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 3.7e-99 365.5 289 65.4
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 3.7e-99 365.5 282 66.0
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 3.7e-99 365.5 290 66.9
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 6.4e-99 364.8 303 65.0
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.4e-98 363.6 306 62.7
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 2.4e-98 362.8 292 65.4
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 4.1e-98 362.1 297 65.7
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 5.4e-98 361.7 287 68.3
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 7.0e-98 361.3 292 67.8
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.6e-97 360.1 293 66.6
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 2.7e-97 359.4 289 63.3
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.7e-97 359.4 310 61.6
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 4.6e-97 358.6 290 65.9
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 7.8e-97 357.8 303 62.0
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 7.8e-97 357.8 211 80.1
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.0e-96 357.5 288 66.0
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 3.9e-96 355.5 300 64.7
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 5.1e-96 355.1 293 64.8
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 5.1e-96 355.1 293 63.1
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 5.1e-96 355.1 288 65.3
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 8.6e-96 354.4 305 61.6
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 8.6e-96 354.4 305 61.6
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.5e-95 353.6 300 62.3
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.5e-95 353.6 294 63.3
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.9e-95 353.2 282 63.1
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 4.3e-95 352.1 284 68.7
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 5.6e-95 351.7 304 62.5
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 5.6e-95 351.7 307 60.9
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.1e-94 349.7 316 60.8
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.1e-94 349.7 316 60.8
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 2.8e-94 349.4 297 63.6
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.4e-93 347.1 297 63.3
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 6.8e-93 344.7 301 60.8
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.2e-92 344.0 230 73.0
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 2.0e-92 343.2 269 65.1
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 3.4e-92 342.4 224 74.6
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 5.8e-92 341.7 224 74.6
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 7.5e-92 341.3 289 62.6
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 7.5e-92 341.3 281 66.2
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 9.9e-92 340.9 303 60.1
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.7e-91 340.1 315 60.6
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 8.3e-91 337.8 198 81.3
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.9e-90 336.7 320 60.3
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.5e-89 332.4 220 71.8
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 3.5e-89 332.4 254 65.4
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 6.0e-89 331.6 225 73.8
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.0e-88 329.3 234 69.7
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 2.5e-87 326.2 296 60.5
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 4.7e-86 322.0 239 69.5
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 1.4e-85 320.5 211 71.1
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 3.8e-83 312.4 223 67.3
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 4.0e-77 292.4 206 78.2
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 2.6e-76 289.7 236 65.7
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 3.0e-72 276.2 218 58.7
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 2.9e-67 259.6 212 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 2.3e-64 250.0 221 55.7
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.5e-63 246.5 215 59.1
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 5.6e-63 245.4 200 65.5
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.1e-61 241.1 212 61.3
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 6.9e-61 238.4 213 61.5
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 2.9e-59 233.0 162 71.6
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.6e-54 217.2 232 47.4
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 4.0e-53 212.6 163 66.9
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.5e-52 210.7 137 75.9
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 5.8e-52 208.8 218 46.3
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 5.8e-52 208.8 191 51.8
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.8e-46 189.9 132 70.5
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.3e-43 181.0 150 64.7
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 1.4e-42 177.6 113 73.5
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.7e-41 173.3 120 71.7
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.7e-33 146.7 91 74.7
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.7e-33 146.0 79 87.3
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.7e-33 146.0 79 87.3
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 4.2e-26 122.9 152 52.6
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 5.5e-18 95.9 234 27.8
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.6e-17 94.4 126 46.8
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 3.5e-12 76.6 51 78.4
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 7.7e-12 75.5 48 83.3
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 1.2e-09 68.2 58 56.9
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 4.0e-08 63.2 53 62.3
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 6.8e-08 62.4 208 25.5
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 8.8e-08 62.0 271 22.9
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 8.8e-08 62.0 124 26.6
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 7.5e-07 58.9 79 45.6
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 7.5e-07 58.9 79 45.6
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 2.2e-06 57.4 216 21.8
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 2.2e-06 57.4 40 60.0


User provided reference genes

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