Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G232500 Prunus persica HOM05D007373 ORTHO05D009192 8.3e-59 229.9 100 100.0
MD12G1113600 Malus domestica HOM05D007373 ORTHO05D009192 1.1e-55 219.5 100 95.0
MD04G1093900 Malus domestica HOM05D007373 ORTHO05D009192 7.3e-55 216.9 100 94.0
GSVIVG01025730001 Vitis vinifera HOM05D007373 ORTHO05D009192 1.8e-53 212.2 100 91.0
Solyc09g008155.1 Solanum lycopersicum HOM05D007373 ORTHO05D009192 4.0e-53 211.1 100 90.0
Sopen09g002960 Solanum pennellii HOM05D007373 ORTHO05D009192 4.0e-53 211.1 100 90.0
PGSC0003DMG400003861 Solanum tuberosum HOM05D007373 ORTHO05D009192 4.0e-53 211.1 100 90.0
CANSAT80G1991 Cannabis sativa HOM05D007373 ORTHO05D009192 5.2e-53 210.7 100 91.0
Thecc.05G065600 Theobroma cacao HOM05D007373 ORTHO05D009192 6.8e-53 210.3 100 91.0
Sed0025593 Sechium edule HOM05D007373 ORTHO05D009192 1.2e-52 209.5 100 89.0
PGR004G1687 Punica granatum HOM05D007373 ORTHO05D009192 1.5e-52 209.1 100 90.0
CSS0040934 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 3.4e-52 208.0 98 90.8
Peaxi162Scf00701g00211 Petunia axillaris HOM05D007373 ORTHO05D009192 5.8e-52 207.2 100 88.0
ClCG10G020140 Citrullus lanatus HOM05D007373 ORTHO05D009192 7.5e-52 206.8 100 88.0
CSS0019413 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 1.3e-51 206.1 98 89.8
RcHm_v2.0_Chr3g0470161 Rosa chinensis HOM05D007373 ORTHO05D009192 1.3e-51 206.1 100 88.0
TAR629G0480 Trochodendron aralioides HOM05D007373 ORTHO05D009192 1.3e-51 206.1 100 87.0
Nitab4.5_0002632g0030 Nicotiana tabacum HOM05D007373 ORTHO05D009192 2.9e-51 204.9 100 88.0
Eucgr.A01684 Eucalyptus grandis HOM05D007373 ORTHO05D009192 3.7e-51 204.5 100 87.0
TAR374G0263 Trochodendron aralioides HOM05D007373 ORTHO05D009192 4.9e-51 204.1 100 86.0
Gohir.A09G147200 Gossypium hirsutum HOM05D007373 ORTHO05D009192 6.4e-51 203.8 100 87.0
Gohir.D09G142800 Gossypium hirsutum HOM05D007373 ORTHO05D009192 6.4e-51 203.8 100 87.0
Gorai.006G164300 Gossypium raimondii HOM05D007373 ORTHO05D009192 6.4e-51 203.8 100 87.0
CiPaw.09G173000 Carya illinoinensis HOM05D007373 ORTHO05D009192 8.3e-51 203.4 98 87.8
Nn3g17468 Nelumbo nucifera HOM05D007373 ORTHO05D009192 3.2e-50 201.4 100 85.0
QL07p043588 Quercus lobata HOM05D007373 ORTHO05D009192 9.2e-50 199.9 99 85.9
Atru.chr8.1817 Acer truncatum HOM05D007373 ORTHO05D009192 1.6e-49 199.1 98 84.7
Lj5g0010566 Lotus japonicus HOM05D007373 ORTHO05D009192 1.6e-49 199.1 100 85.0
CAN.G900.38 Capsicum annuum HOM05D007373 ORTHO05D009192 2.1e-49 198.7 100 85.0
Dinv35786 Davidia involucrata HOM05D007373 ORTHO05D009192 2.1e-49 198.7 100 87.0
Potri.016G092100 Populus trichocarpa HOM05D007373 ORTHO05D009192 2.7e-49 198.4 100 85.0
Cc06_g04200 Coffea canephora HOM05D007373 ORTHO05D009192 3.5e-49 198.0 100 83.0
COL.COLO4_26968 Corchorus olitorius HOM05D007373 ORTHO05D009192 4.6e-49 197.6 100 84.0
Cfa017601 Carpinus fangiana HOM05D007373 ORTHO05D009192 6.0e-49 197.2 100 85.0
Sabra16G0097700 Salix brachista HOM05D007373 ORTHO05D009192 6.0e-49 197.2 100 84.0
Sc02g0001650 Simmondsia chinensis HOM05D007373 ORTHO05D009192 7.8e-49 196.8 100 83.0
Migut.J00499 Erythranthe guttata HOM05D007373 ORTHO05D009192 1.3e-48 196.1 100 84.0
MBI16_g10844_MAGBIO Magnolia biondii HOM05D007373 ORTHO05D009192 2.3e-48 195.3 98 85.7
Peaxi162Scf00311g00515 Petunia axillaris HOM05D007373 ORTHO05D009192 8.6e-48 193.4 95 86.3
Ciclev10013190m.g Citrus clementina HOM05D007373 ORTHO05D009192 1.9e-47 192.2 100 81.0
Duzib128G1309 Durio zibethinus HOM05D007373 ORTHO05D009192 3.3e-47 191.4 100 82.0
PSO017G7276 Papaver somniferum HOM05D007373 ORTHO05D009192 3.3e-47 191.4 100 81.0
PSO478G2855 Papaver somniferum HOM05D007373 ORTHO05D009192 3.3e-47 191.4 100 81.0
EL10Ac7g16624 Beta vulgaris HOM05D007373 ORTHO05D009192 2.1e-46 188.7 100 81.0
CARHR084370 Cardamine hirsuta HOM05D007373 ORTHO05D009192 2.1e-46 188.7 100 83.0
DCAR_020820 Daucus carota HOM05D007373 ORTHO05D009192 2.8e-46 188.3 100 81.0
Carub.0003s0895 Capsella rubella HOM05D007373 ORTHO05D009192 3.6e-46 188.0 100 82.0
AL3G21090 Arabidopsis lyrata HOM05D007373 ORTHO05D009192 6.2e-46 187.2 100 82.0
AT3G09860 Arabidopsis thaliana HOM05D007373 ORTHO05D009192 6.2e-46 187.2 100 82.0
ATR0177G027 Amborella trichopoda HOM05D007373 ORTHO05D009192 1.1e-45 186.4 100 82.0
Glyma.10G056800 Glycine max HOM05D007373 ORTHO05D009192 1.4e-45 186.0 100 76.0
TWI53G0924 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 1.4e-45 186.0 100 78.0
BcaC05g29497 Brassica carinata HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 81.0
BcaC05g29708 Brassica carinata HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 81.0
A05p39190 Brassica napus HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 81.0
C05p58240 Brassica napus HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 81.0
BolC5t34478H Brassica oleracea HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 81.0
BraA05t22708Z Brassica rapa HOM05D007373 ORTHO05D009192 2.3e-45 185.3 100 81.0
Thhalv10022256m.g Eutrema salsugineum HOM05D007373 ORTHO05D009192 3.1e-45 184.9 100 81.0
FvH4_6g16300 Fragaria vesca HOM05D007373 ORTHO05D009192 3.1e-45 184.9 100 77.0
FAN14G5019 Fragaria x ananassa HOM05D007373 ORTHO05D009192 3.1e-45 184.9 100 77.0
FAN02G4061 Fragaria x ananassa HOM05D007373 ORTHO05D009192 5.2e-45 184.1 100 76.0
THA.LOC104816346 Tarenaya hassleriana HOM05D007373 ORTHO05D009192 5.2e-45 184.1 100 78.0
Lsat_1_v5_gn_6_25141 Lactuca sativa HOM05D007373 ORTHO05D009192 6.8e-45 183.7 100 76.0
Sp3g08200 Schrenkiella parvula HOM05D007373 ORTHO05D009192 8.9e-45 183.3 100 80.0
Manes.08G010000 Manihot esculenta HOM05D007373 ORTHO05D009192 1.5e-44 182.6 100 77.0
TWI74G0510 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 1.5e-44 182.6 100 78.0
unitig_27.g25376 Utricularia gibba HOM05D007373 ORTHO05D009192 1.5e-44 182.6 100 78.0
Dinv37313 Davidia involucrata HOM05D007373 ORTHO05D009192 5.8e-44 180.6 85 90.6
Phvul.007G219900 Phaseolus vulgaris HOM05D007373 ORTHO05D009192 7.5e-44 180.3 100 76.0
Cpa.g.sc56.30 Carica papaya HOM05D007373 ORTHO05D009192 1.7e-43 179.1 88 86.4
Glyma.13G143300 Glycine max HOM05D007373 ORTHO05D009192 4.9e-43 177.6 97 74.2
CDE10G1255 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 6.4e-43 177.2 98 74.5
ECA233G3432 Erigeron canadensis HOM05D007373 ORTHO05D009192 8.3e-43 176.8 100 72.0
CsaV3_3G035970 Cucumis sativus L. HOM05D007373 ORTHO05D009192 4.1e-42 174.5 100 72.0
CDE10G0795 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 5.4e-42 174.1 98 72.4
HanXRQChr02g0051631 Helianthus annuus HOM05D007373 ORTHO05D009192 5.4e-42 174.1 100 72.0
Lalb_Chr02g0155881 Lupinus albus HOM05D007373 ORTHO05D009192 9.2e-42 173.3 100 73.0
Lalb_Chr02g0155991 Lupinus albus HOM05D007373 ORTHO05D009192 9.2e-42 173.3 100 73.0
Aqoxy3G03675 Aquilegia oxysepala HOM05D007373 ORTHO05D009192 1.6e-41 172.6 98 74.5
HanXRQChr13g0401061 Helianthus annuus HOM05D007373 ORTHO05D009192 2.1e-41 172.2 100 71.0
Duzib106G1098 Durio zibethinus HOM05D007373 ORTHO05D009192 1.1e-39 166.4 134 58.2
AUR62040359 Chenopodium quinoa HOM05D007373 ORTHO05D009192 5.6e-39 164.1 100 73.0
AUR62042495 Chenopodium quinoa HOM05D007373 ORTHO05D009192 5.6e-39 164.1 100 73.0
Medtr1g063360 Medicago truncatula HOM05D007373 ORTHO05D009192 6.8e-37 157.1 99 65.7
Aa31LG3G2330 Aethionema arabicum HOM05D007373 ORTHO05D009192 5.8e-36 154.1 170 47.1
Actinidia28903 Actinidia chinensis HOM05D007373 ORTHO05D009192 9.9e-36 153.3 100 63.0
BolC1t05427H Brassica oleracea HOM05D007373 ORTHO05D009192 9.9e-36 153.3 88 76.1
Actinidia08775 Actinidia chinensis HOM05D007373 ORTHO05D009192 1.7e-35 152.5 100 62.0
TPR.G6865 Trifolium pratense HOM05D007373 ORTHO05D009192 3.8e-35 151.4 99 66.7
Psat6g073000 Pisum sativum HOM05D007373 ORTHO05D009192 1.2e-33 146.4 99 61.6
SGA_v2.0_scaffold40G15517 Striga asiatica HOM05D007373 ORTHO05D009192 1.7e-32 142.5 111 56.8
Nitab4.5_0000578g0180 Nicotiana tabacum HOM05D007373 ORTHO05D009192 3.3e-31 138.3 70 84.3
Pp3c23_20900 Physcomitrium patens HOM05D007373 ORTHO05D009192 1.1e-29 133.3 101 60.4
Mapoly0091s0024 Marchantia polymorpha HOM05D007373 ORTHO05D009192 9.3e-26 120.2 101 55.4
AagrBONN_evm.TU.Sc2ySwM_368.2821 Anthoceros agrestis HOM05D007373 ORTHO05D009192 3.3e-23 111.7 102 54.9
BcaB04g21242 Brassica carinata HOM05D007373 ORTHO05D009192 1.1e-21 106.7 57 80.7
SEGI_18158 Sequoiadendron giganteum HOM05D007373 ORTHO05D009192 4.9e-19 97.8 100 45.0
Nn2g15280 Nelumbo nucifera HOM05D007373 ORTHO05D009192 1.5e-15 86.3 40 90.0
Ah.15g092500 Amaranthus hybridus HOM05D007373 ORTHO05D009192 1.1e-13 80.1 41 85.4
Atru.BG.127.p Acer truncatum HOM05D007373 ORTHO05D009192 4.9e-11 71.2 31 93.5
Zm00001eb212440 Zea mays HOM05D007373 ORTHO05D009192 1.3e-08 63.2 74 36.5
CBR_g23007 Chara braunii HOM05D007373 ORTHO05D009192 2.3e-08 62.4 81 37.0
Os03g0578200 Oryza sativa ssp. japonica HOM05D007373 ORTHO05D009192 3.9e-08 61.6 74 37.8
Zm00001eb061850 Zea mays HOM05D007373 ORTHO05D009192 5.1e-08 61.2 74 36.5
MELO3C009354.2 Cucumis melo HOM05D053349 ORTHO05D009192 6.2e-06 54.3 24 87.5


User provided reference genes

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