Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 8.5e-120 433.7 224 100.0
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.6e-65 253.4 229 69.4
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 2.1e-65 253.1 237 67.9
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 6.6e-64 248.1 244 67.2
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 8.6e-64 247.7 247 66.0
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.5e-63 246.9 227 67.0
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.2e-61 238.4 225 64.4
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.4e-58 229.6 236 61.9
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 7.1e-58 228.0 236 61.9
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 9.2e-58 227.6 224 61.2
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 9.2e-58 227.6 224 61.2
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 7.6e-52 208.0 235 59.6
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 4.2e-50 202.2 236 57.2
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.6e-49 200.3 232 57.3
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 3.9e-48 195.7 239 58.2
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.6e-48 194.9 234 57.7
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.7e-48 194.5 234 57.7
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.9e-47 193.4 234 57.3
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 3.3e-47 192.6 236 55.5
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 3.3e-47 192.6 238 58.4
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 9.6e-47 191.0 238 56.7
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.4e-45 186.4 233 55.4
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.0e-45 185.7 224 54.0
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 4.0e-45 185.7 233 54.5
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 4.0e-45 185.7 235 55.7
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.2e-44 184.1 224 52.7
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.0e-44 183.3 224 54.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 4.4e-44 182.2 233 53.2
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 7.6e-44 181.4 233 54.1
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 8.4e-43 177.9 231 52.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.1e-42 177.6 231 52.8
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.9e-42 176.8 224 52.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 1.9e-42 176.8 224 53.6
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 3.2e-42 176.0 225 55.6
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 5.4e-42 175.3 224 53.6
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 5.4e-42 175.3 237 54.0
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 2.1e-41 173.3 236 54.2
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 2.1e-41 173.3 224 54.0
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 3.5e-41 172.6 235 51.9
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.1e-39 167.5 236 52.1
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 2.5e-39 166.4 227 51.1
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 9.6e-39 164.5 233 48.1
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 2.4e-37 159.8 237 48.1
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.0e-36 156.8 225 50.2
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 7.6e-36 154.8 226 49.1
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.1e-34 151.0 226 50.0
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.1e-34 151.0 238 48.3
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 5.5e-34 148.7 206 50.0
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 7.1e-34 148.3 205 51.2
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.8e-32 143.7 210 46.2
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 3.0e-32 142.9 239 45.2
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 3.0e-32 142.9 225 44.9
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 3.9e-32 142.5 225 48.9
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.9e-32 142.5 240 50.4
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 5.1e-32 142.1 229 48.5
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.1e-31 141.0 240 49.2
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.5e-31 140.6 240 50.0
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.3e-31 139.0 237 46.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.6e-31 138.7 229 48.0
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.3e-30 137.5 226 43.4
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.8e-30 136.3 226 49.6
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.7e-30 136.0 223 46.2
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.4e-29 134.0 222 44.6
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.8e-29 133.7 237 45.6
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.8e-29 133.7 227 48.0
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.4e-29 133.3 227 43.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 4.0e-29 132.5 215 45.6
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.0e-29 132.5 144 54.9
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 5.3e-29 132.1 224 46.0
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 6.9e-29 131.7 228 45.6
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.2e-28 131.0 236 45.8
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.0e-28 130.2 185 49.7
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.0e-28 130.2 185 49.2
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.8e-28 128.6 221 43.9
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 5.8e-28 128.6 230 43.9
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.0e-27 127.9 227 43.2
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 2.9e-27 126.3 224 45.1
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.9e-27 125.6 223 43.9
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 8.4e-27 124.8 241 41.5
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 8.4e-27 124.8 224 42.4
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.9e-26 123.6 223 43.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.9e-26 123.6 248 41.5
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 2.5e-26 123.2 221 41.2
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 5.5e-26 122.1 227 45.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 9.3e-26 121.3 226 43.8
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 9.3e-26 121.3 228 41.2
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.6e-25 119.0 155 52.3
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 6.0e-25 118.6 234 43.2
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 6.0e-25 118.6 224 40.6
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.3e-24 117.5 225 44.0
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 1.3e-24 117.5 225 40.4
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-24 117.5 231 45.5
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.8e-24 117.1 221 39.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 2.3e-24 116.7 225 42.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 2.3e-24 116.7 231 45.5
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 3.0e-24 116.3 244 40.6
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 5.1e-24 115.5 238 38.2
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.1e-23 114.4 156 49.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 9.6e-23 111.3 240 39.6
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.7e-22 109.4 227 43.2
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.7e-22 109.4 227 43.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.1e-21 106.3 224 38.4
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.3e-21 105.5 225 41.3
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.3e-21 105.5 237 40.9
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.5e-20 104.0 222 40.1
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 2.6e-20 103.2 224 37.9
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.4e-20 102.8 222 40.1
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.7e-19 100.5 222 40.1
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 2.9e-19 99.8 229 39.7
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.9e-18 97.1 162 44.4
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 3.2e-18 96.3 247 37.2
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.2e-18 96.3 228 39.5
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 4.2e-18 95.9 236 37.3
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 5.5e-18 95.5 160 45.6
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 9.3e-18 94.7 240 36.7
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.2e-17 94.4 228 37.3
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 3.6e-17 92.8 240 36.7
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.6e-17 92.8 154 45.5
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 6.1e-17 92.0 257 38.1
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 7.9e-17 91.7 184 42.4
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.8e-16 90.5 161 41.6
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.0e-16 89.7 126 51.6
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 3.9e-16 89.4 136 41.9
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 3.9e-16 89.4 248 34.3
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 5.1e-16 89.0 234 32.5
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 8.7e-16 88.2 165 41.2
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 3.3e-15 86.3 162 39.5
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 3.3e-15 86.3 162 39.5
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 4.3e-15 85.9 176 44.3
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.3e-14 84.3 162 38.9
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-14 84.3 162 38.9
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.3e-14 84.3 162 38.9
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.6e-14 84.0 165 40.0
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.6e-14 84.0 165 40.0
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.6e-14 84.0 131 45.0
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.6e-14 84.0 137 42.3
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.6e-14 84.0 143 41.3
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.6e-14 84.0 129 48.8
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 2.2e-14 83.6 165 40.6
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 4.8e-14 82.4 165 40.6
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 6.3e-14 82.0 264 33.3
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 6.3e-14 82.0 129 41.1
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 8.2e-14 81.6 229 34.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.8e-13 80.5 149 39.6
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.8e-13 80.5 149 39.6
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 3.1e-13 79.7 144 40.3
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-12 77.4 149 38.9
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.5e-12 77.4 149 38.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.6e-12 76.6 173 41.0
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 5.9e-12 75.5 218 34.4
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 1.0e-11 74.7 149 38.3
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.0e-11 74.7 211 35.1
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 3.8e-11 72.8 223 31.8
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-10 70.9 85 49.4
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.4e-10 70.9 224 32.1
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 5.5e-10 68.9 237 30.4
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 9.4e-10 68.2 251 31.5
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 2.7e-09 66.6 222 34.2
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.9e-09 65.1 222 27.9
Sed0005334 Sechium edule HOM05D004032 ORTHO05D004462 1.4e-08 64.3 184 33.7
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.4e-08 64.3 58 56.9
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.9e-08 62.8 103 42.7
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.1e-08 62.4 62 50.0
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 6.7e-08 62.0 127 34.6
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 8.8e-08 61.6 125 35.2
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 7.4e-07 58.5 55 50.9
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.2e-06 57.0 43 58.1
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.8e-06 56.6 176 31.8
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.8e-06 56.6 173 31.8
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 8.2e-06 55.1 58 53.4


User provided reference genes

Program Settings