Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.1e-275 952.6 453 100.0
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.2e-259 897.5 453 91.8
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.1e-258 895.2 451 91.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.7e-258 894.8 453 91.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.1e-257 890.6 463 90.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.4e-251 869.8 450 89.3
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.1e-250 868.6 453 88.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 1.0e-249 866.3 453 88.7
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 2.0e-248 862.1 453 87.9
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.3e-248 861.3 453 86.5
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 5.7e-248 860.5 453 89.8
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 8.2e-247 856.7 453 88.7
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.1e-246 856.3 447 89.3
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.4e-246 855.9 453 86.8
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 4.1e-246 854.4 451 87.6
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-245 852.8 448 88.2
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.2e-245 852.8 451 88.2
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 3.4e-245 851.3 453 86.5
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 4.5e-245 850.9 453 87.4
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 7.7e-245 850.1 452 86.3
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 7.7e-245 850.1 453 85.7
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.0e-244 849.7 452 86.5
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.0e-244 849.7 450 86.9
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 2.2e-244 848.6 450 86.7
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.8e-244 847.8 450 87.8
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 6.5e-244 847.0 453 86.3
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 6.5e-244 847.0 453 86.3
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.1e-243 846.3 450 86.9
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.2e-243 844.7 453 85.9
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 4.2e-243 844.3 452 86.5
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 4.2e-243 844.3 450 85.1
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.2e-242 842.8 450 85.3
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.6e-242 842.4 449 85.1
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 6.1e-242 840.5 449 86.6
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 7.9e-242 840.1 453 85.2
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 7.9e-242 840.1 453 86.1
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.0e-241 839.7 453 85.2
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.4e-241 839.3 448 85.5
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.0e-241 838.2 444 87.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.0e-241 838.2 449 84.9
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 5.2e-241 837.4 453 85.9
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.7e-241 837.0 453 85.4
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.1e-240 836.3 452 85.6
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.1e-240 836.3 453 85.4
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.5e-240 835.9 453 86.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.0e-240 835.5 453 85.4
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 7.4e-240 833.6 453 85.4
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 7.4e-240 833.6 432 89.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 9.7e-240 833.2 448 85.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 9.7e-240 833.2 448 86.4
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.2e-239 832.0 451 85.6
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.7e-239 831.2 450 86.2
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 4.8e-239 830.9 453 85.2
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.3e-239 830.5 451 85.8
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.1e-238 829.7 450 85.3
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.4e-238 829.3 448 86.6
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.4e-238 829.3 448 86.6
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.4e-238 829.3 452 84.5
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.8e-238 828.9 451 85.8
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 5.3e-238 827.4 450 84.0
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.2e-237 826.2 453 85.2
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.0e-237 825.5 453 84.5
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.0e-237 825.5 450 84.4
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.6e-237 825.1 453 84.5
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.6e-237 825.1 483 80.5
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.5e-237 824.7 453 83.9
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 5.9e-237 823.9 453 83.9
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 1.0e-236 823.2 453 85.4
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.0e-236 823.2 446 84.3
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.0e-236 823.2 440 85.0
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.2e-236 822.0 452 84.7
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.9e-236 821.6 454 84.4
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 5.0e-236 820.8 450 84.7
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 6.5e-236 820.5 450 85.1
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 6.5e-236 820.5 447 86.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 6.5e-236 820.5 453 83.2
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 8.5e-236 820.1 447 87.2
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 2.5e-235 818.5 453 84.1
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 3.2e-235 818.1 450 85.3
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.6e-234 815.8 453 83.4
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.6e-234 815.8 447 84.1
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.6e-234 815.8 450 84.2
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.1e-234 815.5 453 82.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 8.0e-234 813.5 447 84.6
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 8.0e-234 813.5 496 77.8
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.4e-233 812.8 453 82.8
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.8e-233 812.4 453 82.8
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.8e-233 812.4 453 82.8
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.8e-233 812.4 450 84.2
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.8e-233 812.4 453 82.8
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 3.0e-233 811.6 453 82.6
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.0e-233 811.6 448 83.3
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 4.0e-233 811.2 452 83.4
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 8.8e-233 810.1 453 82.1
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 8.8e-233 810.1 432 85.0
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.5e-232 809.3 447 85.5
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 2.8e-231 805.1 446 84.3
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.8e-230 802.4 449 83.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.6e-229 799.3 443 83.1
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.9e-228 795.0 469 79.1
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 3.6e-226 788.1 448 83.7
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.0e-224 782.3 449 79.7
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.0e-224 782.3 449 79.1
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 3.4e-224 781.6 447 81.0
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 7.5e-224 780.4 452 81.0
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 2.8e-223 778.5 412 86.9
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 2.5e-219 765.4 450 77.8
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.1e-218 762.3 453 79.5
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.2e-205 719.9 448 75.4
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.9e-205 717.6 443 77.4
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 5.0e-204 714.5 457 75.1
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 3.3e-203 711.8 380 86.8
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.6e-202 709.5 446 72.6
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 8.9e-201 703.7 388 82.7
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.2e-199 699.1 452 72.1
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.4e-198 694.5 464 73.1
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.6e-195 684.5 376 83.2
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-183 646.7 443 71.6
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-178 629.8 452 70.1
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 6.9e-177 624.4 334 87.1
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.4e-166 590.1 434 68.0
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.9e-159 565.1 451 63.4
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.0e-156 555.8 298 87.6
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 7.4e-155 551.2 299 86.3
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.0e-152 543.1 316 77.2
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 4.8e-146 521.9 288 83.0
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 8.5e-135 484.6 444 57.7
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.9e-126 456.8 379 58.6
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.4e-123 445.7 295 69.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.3e-111 407.5 280 69.6
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.2e-91 341.3 200 79.0
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 3.6e-77 293.1 162 81.5
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 4.9e-74 282.7 153 81.7
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.5e-70 271.2 153 75.8
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 5.6e-70 269.2 198 70.2
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.8e-68 264.2 271 50.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.2e-67 261.5 140 85.7
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.6e-67 260.4 148 78.4
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 3.8e-66 256.5 147 78.9
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.1e-64 250.8 147 78.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.1e-61 240.7 194 60.3
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 4.3e-54 216.5 138 74.6
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.8e-53 213.8 135 76.3
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.8e-47 194.5 111 82.9
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.3e-46 189.9 117 74.4
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 2.3e-39 167.5 132 59.8
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.1e-24 117.9 55 96.4
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.5e-22 111.7 78 69.2
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.2e-21 107.8 74 68.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.3e-21 106.3 66 75.8
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.5e-19 101.7 66 69.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.6e-19 100.9 68 67.6
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.3e-18 98.6 83 54.2
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 2.9e-18 97.4 72 65.3
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 5.5e-17 93.2 80 56.2
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-14 85.5 67 56.7
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.6e-14 84.3 49 71.4
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.8e-12 78.2 65 58.5
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 5.3e-12 76.6 46 67.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.6e-11 74.3 41 75.6
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 5.0e-10 70.1 36 86.1
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 1.2e-08 65.5 168 28.0


User provided reference genes

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