Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 2.9e-32 141.4 74 100.0
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 7.8e-22 106.7 57 96.5
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 1.7e-21 105.5 57 94.7
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 4.5e-17 90.9 58 79.3
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 4.9e-16 87.4 57 78.9
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 1.1e-15 86.3 57 78.9
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 1.1e-15 86.3 57 75.4
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.1e-15 86.3 57 75.4
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 1.4e-15 85.9 57 77.2
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.4e-15 85.9 57 73.7
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 2.4e-15 85.1 57 77.2
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 4.2e-15 84.3 57 77.2
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 5.4e-15 84.0 57 73.7
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 9.3e-15 83.2 57 75.4
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 1.2e-14 82.8 57 73.7
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 1.6e-14 82.4 57 73.7
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 2.1e-14 82.0 57 71.9
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 3.5e-14 81.3 57 70.2
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 3.5e-14 81.3 57 71.9
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 4.6e-14 80.9 57 70.2
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 6.0e-14 80.5 57 71.9
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.0e-13 79.7 57 70.2
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.0e-13 79.7 57 70.2
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 1.3e-13 79.3 57 71.9
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 1.3e-13 79.3 71 57.7
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 1.8e-13 79.0 71 57.7
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 2.3e-13 78.6 57 66.7
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 3.0e-13 78.2 58 67.2
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 3.0e-13 78.2 57 70.2
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 5.1e-13 77.4 57 68.4
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 6.7e-13 77.0 57 66.7
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 6.7e-13 77.0 57 68.4
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.5e-12 75.9 50 76.0
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.5e-12 75.9 50 76.0
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 1.5e-12 75.9 71 56.3
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 1.5e-12 75.9 58 62.1
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 1.9e-12 75.5 57 64.9
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.5e-12 75.1 57 66.7
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 4.3e-12 74.3 57 64.9
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 5.6e-12 73.9 57 63.2
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 7.4e-12 73.6 57 64.9
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 7.4e-12 73.6 69 60.9
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 7.4e-12 73.6 57 64.9
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 1.3e-11 72.8 57 63.2
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.3e-11 72.8 57 61.4
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 1.6e-11 72.4 64 57.8
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 2.1e-11 72.0 57 63.2
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 2.8e-11 71.6 57 64.9
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 2.8e-11 71.6 57 66.7
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 3.7e-11 71.2 60 65.0
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 3.7e-11 71.2 56 62.5
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 3.7e-11 71.2 57 63.2
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 4.8e-11 70.9 57 59.6
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 6.2e-11 70.5 71 56.3
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 6.2e-11 70.5 67 56.7
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 6.2e-11 70.5 67 56.7
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 6.2e-11 70.5 67 56.7
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 6.2e-11 70.5 67 56.7
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 6.2e-11 70.5 60 63.3
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 8.1e-11 70.1 71 56.3
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 8.1e-11 70.1 71 54.9
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 8.1e-11 70.1 67 56.7
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 1.1e-10 69.7 57 64.9
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 1.1e-10 69.7 57 61.4
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 1.1e-10 69.7 70 54.3
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 1.4e-10 69.3 71 54.9
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 1.4e-10 69.3 56 60.7
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 1.4e-10 69.3 57 63.2
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 1.8e-10 68.9 71 54.9
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 2.4e-10 68.6 72 50.0
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 2.4e-10 68.6 71 54.9
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 3.1e-10 68.2 56 60.7
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 3.1e-10 68.2 56 60.7
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 3.1e-10 68.2 56 60.7
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 3.1e-10 68.2 56 60.7
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 4.0e-10 67.8 57 59.6
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 4.0e-10 67.8 47 76.6
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 4.0e-10 67.8 57 66.7
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 4.0e-10 67.8 56 58.9
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 9.0e-10 66.6 57 64.9
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 9.0e-10 66.6 57 64.9
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 1.2e-09 66.2 60 53.3
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 1.5e-09 65.9 69 52.2
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 1.5e-09 65.9 71 52.1
Lj6g0018022 Lotus japonicus HOM05D007513 ORTHO05D008148 1.5e-09 65.9 57 56.1
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 1.5e-09 65.9 60 55.0
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 2.0e-09 65.5 48 68.8
Lj6g0007185 Lotus japonicus HOM05D007513 ORTHO05D008148 2.6e-09 65.1 55 58.2
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 3.4e-09 64.7 57 59.6
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 5.8e-09 63.9 57 56.1
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 1.0e-08 63.2 55 58.2
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 1.0e-08 63.2 58 56.9
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 1.7e-08 62.4 49 67.3
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 2.2e-08 62.0 60 55.0
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 4.9e-08 60.8 56 55.4
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 4.9e-08 60.8 57 50.9
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.4e-07 59.3 57 52.6
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 1.9e-07 58.9 56 53.6
Sopen03g007910 Solanum pennellii HOM05D007513 ORTHO05D008148 1.2e-06 56.2 46 63.0
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 2.7e-06 55.1 46 60.9


User provided reference genes

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